Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq1335 682 0.0 seq915 360 7e-95 seq6381 127 8e-25 >seq1335 Length=14169 Score = 682 bits (756), Expect = 0.0 Identities = 559/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Plus Query 23472 CATGACACCAGAAATTATTCTCCAGCGAACTGGCGTGGATATTACCAGCC-TCGACCAGG 23530 ||||||||| || ||||| || ||||| || || | || | | ||| |||| |||| Sbjct 8535 CATGACACCGGACATTATCCTGCAGCGTACCGGGATCGACGTGAG-AGCTGTCGAACAGG 8593 Query 23531 GCGATGATGGATGGCACAAGCTGAGACTCGGTGTTATCACTGCTTCAGAAGTTCACAATG 23590 | ||||||| ||||||||| | | ||||| || ||||| ||||||||||||||||| | Sbjct 8594 GGGATGATGCATGGCACAAATTACGGCTCGGCGTCATCACCGCTTCAGAAGTTCACAACG 8653 Query 23591 TGATAGCAAAGCCACGTTCCGGCAGCAAATGGCCTGATACAAAAATGTCATACTTCCACA 23650 ||||||||||||| || || || | || |||||||| | |||||||| |||||||||| Sbjct 8654 TGATAGCAAAGCCCCGCTCAGGAAAGAAGTGGCCTGACATGAAAATGTCCTACTTCCACA 8713 Query 23651 CCCTGCTGGCTGAAGTTTGTACTGGCGTGGCACCGGAAGTTAACGCTAAGTCGCTCGCAT 23710 ||||||||||||| ||||| || || ||||| ||||||||||| |||||| |||| || | Sbjct 8714 CCCTGCTGGCTGAGGTTTGCACCGGTGTGGCTCCGGAAGTTAATGCTAAGGCGCTGGCCT 8773 Query 23711 GGGGAAAGCAATACGAAGATGATGCCCGTGCCCTCTTCGAATTTATCGCGGATGTTACCG 23770 ||||||| || ||||| | || ||| | ||||| || || |||| | | || | | Sbjct 8774 GGGGAAAACAGTACGAGAACGACGCCAGAGCCCTGTTTGAGTTTACTTCCGGCGTGAATG 8833 Query 23771 TCTCGGAAACGCCAATAATTTTTCGTGACGAAAGCATGCGCACCGCCTGCTCTCCCGACG 23830 | | ||| | || || || | ||| |||||||| ||||||||||||||||||||||| | Sbjct 8834 TTACTGAATCCCCGATCATCTATCGCGACGAAAGTATGCGCACCGCCTGCTCTCCCGATG 8893 Query 23831 GTTTATGCAGCGACGGTAACGGTCTTGAGCTTAAATGCCCTTTTACTTCCCGCGACTTCA 23890 |||||||||| ||||| ||||| ||||| || |||||||| ||||| ||||| || |||| Sbjct 8894 GTTTATGCAGTGACGGCAACGGCCTTGAACTGAAATGCCCGTTTACCTCCCGGGATTTCA 8953 Query 23891 TGAAATTCCGGCTTGGCGGCTTTGACGCTATCAAGCCTGCTTACATGGCCCAGGTGCAAT 23950 ||||||||||||| || || || || || || ||| | |||||||||||||||||||| | Sbjct 8954 TGAAATTCCGGCTCGGTGGTTTCGAGGCCATAAAGTCGGCTTACATGGCCCAGGTGCAGT 9013 Query 23951 TCAGCATGTGGGTTACAGACAAGGACGCCTGGTACTTCGCCAACTACGACCCACGCATGA 24010 |||||||||||| || || || ||||||||||| |||||||| |||||||| |||| Sbjct 9014 ACAGCATGTGGGTGACGCGAAAAGATGCCTGGTACTTTGCCAACTATGACCCACGAATGA 9073 Query 24011 AGCGTGAAGGCCTGCATTATGTCGTGGTCGAGCGGGATGAAAAGTACATGGCGAGTTTTG 24070 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 9074 AGCGTGAAGGCCTGCATTATGTCGTGGTTGAGCGGGATGAAAATTACATGGCGAGTTTTG 9133 Query 24071 ATGAGATGGTGCCGGAGTTCATCGACAAAATGGACGAAGCACTGGCGGAAATTGGTTTTG 24130 | ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 9134 ACGAGATGGTGCCGGAGTTCATCGAAAAAATGGACGAGGCACTGGCTGAAATTGGTTTTG 9193 Query 24131 TATTTGGAGAACAATGG 24147 ||||||| || |||||| Sbjct 9194 TATTTGGGGAGCAATGG 9210 >seq915 Length=38681 Score = 360 bits (398), Expect = 7e-95 Identities = 396/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Minus Query 30392 AAATACACCCTCATTTACGCAGATCCCCCCTGGACATTCCGCGACAAAGCAACCGATGGT 30451 |||||||| |||||||||||||| || || ||| || ||| ||||||||| |||| || Sbjct 2132 AAATACACTCTCATTTACGCAGACCCGCCTTGGGTATACCGTGACAAAGCAGCCGACGGC 2073 Query 30452 CAACGCGGTGCAAGTTTTAAATATCCGGTCATGAGTCTTCTGGATATCTGCCGCCTCCCG 30511 | ||||| || | || || |||||||| |||| | ||||| ||||||||||| || Sbjct 2072 GAGCGCGGCGCCGGCTTCAAGTATCCGGTTATGAACGTGCTGGACATCTGCCGCCTGCCT 2013 Query 30512 GTATGGGAACTGGCAGCCGATAATTGCCTGTTGTCTATGTGGTGGGTGCCTACACAACCA 30571 || ||||| ||||| ||||| |||||||| || ||||||||||||| || ||||| || Sbjct 2012 GTGTGGGATCTGGCTGCCGAAGATTGCCTGCTGGCTATGTGGTGGGTTCCAACACAGCCG 1953 Query 30572 CTTGAAGCATTGAAGGTTGTAGAAGCGTGGGGCTTTCGTCTGGTGACGATGAAAGGATTA 30631 ||||||| ||||||||| | ||||||||||| ||||| ||| |||||||||| ||||| Sbjct 1952 ATTGAAGCGTTGAAGGTTATCGAAGCGTGGGGATTTCGCCTGATGACGATGAAGGGATTC 1893 Query 30632 ACCTGGAACAAATGCGGGAAAAGACAGACCGACAAGCTGGTCATGGGTATGGGTAGCACC 30691 |||||| ||||| ||| | || | | ||| | ||| || ||||| || Sbjct 1892 ACCTGGCACAAA---ACGAATAAGCACAAAGGCAACAGCGCCATCGGCATGGGACACATG 1836 Query 30692 ACTCGCGCTAACAGCGAAGACTGCCTTTTTGCAGTGAAAGGAAATCTGCCCGAACGCATT 30751 || || || |||||||||||||| || ||||| ||| || || ||||| | ||||| Sbjct 1835 ACCCGGGCGAACAGCGAAGACTGTCTGTTTGCGGTGCGCGGGAAACTGCCGGCGCGCATG 1776 Query 30752 AACGCCGGAATAATCCAGTCAT-TCACTGCACCGCGCCTTGATCACTCCCGCAAGCCGGA 30810 |||| || |||| ||| |||| || |||||||| || |||| ||||||||||| Sbjct 1775 GACGCTTCGATCTGCCAG-CATGTCACGGCGCCGCGCCTGGAGAACTCGCGCAAGCCGGA 1717 Query 30811 TATGGCTCGAGAAAAGCTTGTGCAACTTCTTGGCGATGTTCCCCGGATAGAACTGTTCGC 30870 || |||| ||||| ||||| | ||||||||||| || || || || || ||||| Sbjct 1716 CGTGATCAGAGAGAAGCTGGTGCAGTTGCTTGGCGATGTGCCGCGCATCGAGCTATTCGC 1657 Query 30871 CCGCCACACCTCGCATGGATTTGATGTATGGGGTAACCAATGCG 30914 |||||| | |||||||| ||||| || ||||| ||||| |||| Sbjct 1656 CCGCCAGTCGTCGCATGGGTTTGACGTTTGGGGAAACCAGTGCG 1613 >seq6381 Length=773 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Minus Query 2487 CCGGTTTCTTCCACCACCGCACCGGACAGGCGGCTTCGCGGGAAATCGCTCCCATCTCGT 2546 |||||||||||||||| ||||||||| | ||| || | ||| || | || | ||| || Sbjct 581 CCGGTTTCTTCCACCATCGCACCGGAAAAGCGACTATGAGGGTAACC-CTGCG-TCT-GT 525 Query 2547 GAAAAATGAGAAAACCCGGTGTGCATCGTTTTTGATTATCCCCGCACACTCACGCAGA-- 2604 | | | ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 524 CAGCACAGT-AAAACCCGGTGTGCATCGTTTTTGATTATTCCCGCACACTCACGCAGAAG 466 Query 2605 TAA-----GGT--GGCTGCAGTCTCTGTTAATGCGGGAATACGGCGACGATACGGCGCA 2656 || || |||| | ||| ||||||||||||||||||||||||||| ||||| Sbjct 465 GAATTCCCCGTCGGGCTACGGTCATGGTTAATGCGGGAATACGGCGACGATACAGCGCA 407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195172380754236