Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq3067 246 8e-61 seq6182 149 2e-31 seq2008 113 1e-20 seq4945 111 4e-20 >seq3067 Length=6736 Score = 246 bits (272), Expect = 8e-61 Identities = 416/600 (69%), Gaps = 2/600 (0%) Strand=Plus/Plus Query 2382 CCATGTCACACCCCCGCGATATCAAGAGGAATGGAGCGGTACTGGTCGGTGTCCCCGACC 2441 ||||||||||||||||| |||||||| |||| |||||||||||| || || || Sbjct 4163 CCATGTCACACCCCCGCAATATCAAGGCTGATGGGCTCGTACTGGTCGGTATCACCAACA 4222 Query 2442 CGCTCCTGGATACGCACGTACGCCTTGGTGCTCACGACCTGGACAGCCTCGCCGATGGCC 2501 |||| | | || | ||| | ||||| || || |||||| || ||||||||||| Sbjct 4223 CGCTGATACACGCGGATGTAGGACTTGGAGCCAACCACCTGGCAGGCGTCGCCGATGGCT 4282 Query 2502 TGCATTGCACGCTGCCAACGTTCGTCATCGATCTGCAGGCGGCGCAGGGCAAGCACGCTG 2561 ||||| || |||||||| ||||| || || | || ||||||| || || |||| | Sbjct 4283 TGCATGGCGCGCTGCCAGCGTTCATCGGTAATTTCCATACGGCGCAACGCCAGGACGCGG 4342 Query 2562 CCGGTACGGATGTTCCCTGCTTGGTCCACGCGGAACGCATCGTTGATCAGCGTGATGACC 2621 | || ||||||| ||| |||||| ||||| ||||| || | |||||||| || Sbjct 4343 GCTGTGCGGATGTCGCCTTTTTGGTCAGTCCGGAAGGCATCATTTACCAGCGTGACCACT 4402 Query 2622 TCCGCGCGAGCGCCTTCTGTCCATTCGTGGAGGCACTCGTCGATCAACGCCTTGGCCGCC 2681 || | ||| || || ||||| || | ||||| ||||| ||||| ||| || ||| Sbjct 4403 TCGGGGCGTGCCCCGGTGGTCCAGTCCCGCAGGCATTCGTCAATCAATGCCCGCGCAGCC 4462 Query 2682 TGCAGGCGCTCGTCGAAGGCGATGTTGTCGGCCATGGCCCGAATGACCTTGTAGCGACCG 2741 || ||||| |||||||| |||||| | || | ||| || |||| |||| | || || Sbjct 4463 TGGAGGCGTTCGTCGAAAGCGATGCTTTCCTGTACGGCACGCATGATCTTGAAACGCCCA 4522 Query 2742 TCGAAGCTGACCAGGGAGGCGTTGCCCTTCTTGCCACCTACCTTCGCCTGGTACTGCTCG 2801 |||||||||| |||| | | || |||||||| || || | || || |||||||||| Sbjct 4523 TCGAAGCTGATCAGGCTGACATTTCCCTTCTTCCCGCCGATCTGGGCGCCGTACTGCTCG 4582 Query 2802 GCCGACAGTGTGATGAAGGCTTCGATATCGCCGAATGTCGCCAGTTTGAAATCCAGCAAC 2861 || ||| || |||||||| ||||| ||||| | || ||||| | | || | Sbjct 4583 GCGCTGAGTTCGACAAAGGCTTCAATATCACCGAAAGCCGAGGCCTTGAATTTCGCCAGC 4642 Query 2862 GCCTTGTTCAGAGCCTTCCCCTTGGCAACGATCTCCTGCA-CAAGGCGGTCGCGCTCCAG 2920 | | | | || | || | || | | ||| |||||| || |||||||| Sbjct 4643 ACGTCGCTGGCGGCGCGGGCTTTTTCCACCAGGCCAAGCACCAAGGC-ATCCCGCTCCAG 4701 Query 2921 GTCGATGGGCTTGATCATTTCTTCAGGTACCAGGCGCCCCTTGGCGTCCATGCGGTACCC 2980 |||||| ||||||||||| ||| || | ||| ||| | ||||| | ||| || || Sbjct 4702 GTCGATAGGCTTGATCATGCTTTCCGGGATCAGTCGCTTTTGCGCGTCGACGCGATAGCC 4761 >seq6182 Length=1162 Score = 149 bits (164), Expect = 2e-31 Identities = 326/486 (67%), Gaps = 2/486 (0%) Strand=Plus/Plus Query 13290 GCCGAGCAATACCGGCGCACCCTGGTGCGCAGCGCCCATGCCGAATGGGGCCTGTCGGCG 13349 || |||| ||||| ||| |||| || | |||||| || ||||||||| || || Sbjct 226 GCGGAGCGCTACCGTCGCGACCTGACCCGTATCGCCCAGGCTGAATGGGGCTTGGATGCT 285 Query 13350 CCGATCGCCACCTTTGCCGCACAGGTTCACCAGGAAAGCCGTTGG-CGTGCTGATGCCCG 13408 ||| | ||||||| ||||||||| | |||||||||||||| ||| || | || || Sbjct 286 CCGTTGTCCACCTTCGCCGCACAGATCCACCAGGAAAGCCGCTGGAAGTTC-GACGCGAA 344 Query 13409 CTCGCCTGTTGGTGCCCAGGGTCTGGCGCAGTTCATGCCCGGAACCGCTGAGTGGATCGC 13468 ||||| || ||||| || || ||| ||| | |||||| ||||| ||| | || Sbjct 345 ATCGCCGGTCGGTGCGCAAGGCTTGGGCCAGGTGATGCCCTCGACCGCCACCTGGCTTGC 404 Query 13469 CGGCCTGTATCCGGCCGTCCTCGGCACCAATCAGCCGTTCAATCCAGGCTGGGCACTGCG 13528 || |||| || | |||||| | | | |||| || || | ||| | ||| Sbjct 405 CGAGCTGTTCCCCAAGGCCCTCGGAAAGATCGAACCGTATAACCCGGTTTGGTCCATGCA 464 Query 13529 CGCGCTGGTCACCTACGACCGTTGGCTCTACGACCGAAACCAGGCCTCCAGCGAGTGTGA 13588 ||||| |||| ||| ||||| ||||| |||| | |||||| || || || Sbjct 465 GGCGCTTGTCAGCTATGACCGCTGGCTGGCGAACCGCATCCAGGCGCGTGGCCCCTGCGA 524 Query 13589 TCGCTGGGCATTCGTACTGTCCGCTTACAACGGCGGCCAGGGGTGGGTAAATCGCGACCG 13648 | |||| | | || ||||| || |||||||| || ||||| | || || Sbjct 525 ACAAGGGGCGCTGATCCTTTCCGCCTATAACGGCGGTTTTGGCTGGGTGATCAAAGATCG 584 Query 13649 TAGGCTGGCCTTGGCATCCGGCGCCGACCAGCTGGCCTGGTTCGATTCCGTCGAGCGCTT 13708 | | |||| | ||| || ||||| | |||| |||||||| | || ||||| || || Sbjct 585 CAAGTTGGCATCGGCTAAGGGTGCCGATCCGCTGACCTGGTTCAACTCTGTCGAACGGTT 644 Query 13709 CAACGCCGGGCGCTCGGCCGCCAACTTCCGCGAGAACCGCAACTACCCGCGCCTCATCCT 13768 ||| ||| |||| ||||| ||| | || ||||| | ||||||||||| ||||| Sbjct 645 CAATAACGGCCGCTTCGCCGCTGCGTTCAGGGAAAACCGTCAATACCCGCGCCTGATCCT 704 Query 13769 GCTGCG 13774 | |||| Sbjct 705 GTTGCG 710 >seq2008 Length=9006 Score = 113 bits (124), Expect = 1e-20 Identities = 128/168 (76%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 28202 ATGCAGGAGGCGACTGGTAAGGCCGTTTCTGAAACCGTGGCCGAGTTCTCCAAGCTGGCC 28261 |||||||| || || || ||||| || || || || |||||||||||||||||||| Sbjct 713 ATGCAGGAAGCCACCGGCAAGGCTGTGAGCGAGACTGTCGCCGAGTTCTCCAAGCTGGCA 772 Query 28262 GATGATCCGGTCAAGGCGTC-GCAGCAGCTCAATGACCGCTATCACTACCTGACGGCCTC 28320 || || ||||| ||||| || || || ||| || || | || ||||| |||||||| || Sbjct 773 GACGACCCGGTAAAGGCCTCTGCTGC-GCTGAACGAGCAGTACCACTATCTGACGGCTTC 831 Query 28321 GGTGTACGAGCAGATCACTGCCCTGGAGAGGCAGGGGGA-CACGCTGG 28367 ||| ||| |||||| | || |||||| |||||| || ||||| || Sbjct 832 GGTTTACTCGCAGATTGCCGCACTGGAGCAGCAGGGCGATCACGCCGG 879 Score = 113 bits (124), Expect = 1e-20 Identities = 396/608 (65%), Gaps = 18/608 (3%) Strand=Plus/Plus Query 29144 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 29203 ||| |||| |||||||||||||||| || || ||||||||||| | | ||| Sbjct 1592 GACGAGGTGACCGCAGCCTATGAGGCCGAGATTGCCGCGCTGGAGGCCGTCAAAGGCAAG 1651 Query 29204 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 29263 | ||||| || || |||||| ||||| |||||||||||||||| || || | Sbjct 1652 AAGTCCACGACTGCTGCCCAGAGCATCCAGTTGGACCAGAAGATCGCTGACGCGCGCGCA 1711 Query 29264 AACATGGTCAAGGCGCAGAAGAAGGCAGACGCCGACCTGGAAGTCCT--CCAGCTCAACG 29321 ||||||||||||||||| |||| ||| | | || || || | ||| ||||| Sbjct 1712 GGGATGGTCAAGGCGCAGAAAGAGGCCGACAACCAGCTTGAGGTGTTGGCCA--CCAACG 1769 Query 29322 AACAGGGGCGCCTGAAGAAACAGGCCCAGGCAGTCAAGGCCTACAGCGATGCGCTCCAGC 29381 | || |||||| || |||| | | || ||| ||||| | || || | Sbjct 1770 AGACCGGACGCCTGGCCAAGCAGGAACGGTCAATCACCACCTACGTGCAGGCCCTGGCTC 1829 Query 29382 AACAACAGGATGCGCTGGCCCTCCAGGGTCAACGTGCCGCCGCTGCCGTGGGCATGGGCG 29441 | |||||| || |||| || || ||||| || | || ||||||| ||| | Sbjct 1830 AGCAACAGCGAGCCCTGGAACTTGCCGGCCAACGCGCAGTACTTGGCGTGGGCCAGGGGG 1889 Query 29442 --CGCAACAGCGC-CGCTTGTTCGATCAGCGTGGCAGCCTTGACGACCGATTCGCACAGC 29498 ||| | | ||| | | ||| | | ||||| | ||||| || || |||| Sbjct 1890 ACCGCCAGAACGCACTCAACGGCGAACTG---AACAGCCAGCAAGACCGGTTTGCTCAGC 1946 Query 29499 AGCGCCTGGACCTGGCGAGCCAGTACGGCGACGGCTCGCGTGGCATGAGCCTCGACGAGT 29558 || ||||| |||| | |||| | |||| ||||| |||| || |||| Sbjct 1947 AGTCGCTGGAGTTGGCCAACCAGAAATCCGACCCGTCGCGCAACATGTCGGAGGAGGAGT 2006 Query 29559 ACAA-CGACAAGCTGCAGAAGC-TGCAG--GCGAACCACGCGGCGATGACCGAGCAGCTC 29614 ||| ||| || | ||| || ||||| |||||| | || || || || ||| || Sbjct 2007 TCAAGCGAAAATC-CCAGGCGCTTGCAGATGCGAACAAGGCCGC---CACTGACCAGATC 2062 Query 29615 CAACGCAACTACGCGGCCTTGCAGATCGCGCAGGCAGACTGGACCAACGGTGCCCGCTCG 29674 | | ||||| |||| || ||| ||| |||| |||||||| || || || ||| Sbjct 2063 CGGCAGAACTATGCGGATGTGGAGAACGCACAGGGCGACTGGACGAAGGGCGCGACGTCG 2122 Query 29675 GCGTTCGCCGACTATCTCGACTCGGCCAGGAACGTCGCGGGCCAGACCTACGACCTGTTC 29734 || | ||| |||| || || ||||| | |||| | || ||||||||| | ||||||| Sbjct 2123 GCCTGGGCCAACTACCTGGATTCGGCGAAGAACATTGCCGGCCAGACCAAAAGCCTGTTC 2182 Query 29735 AGCAACGC 29742 |||| || Sbjct 2183 GGCAATGC 2190 >seq4945 Length=7671 Score = 111 bits (122), Expect = 4e-20 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 16381 GCCCTGAGCAGCCGGCCGAGCAACCTGCGCGGCCTGCAGGGCGACGTGGTGATCGACGAG 16440 || |||| ||| || ||| |||||||||||||| ||||||| || ||||||||||| Sbjct 6720 GCGCTGACCAGTCGTCCGTCCAACCTGCGCGGCCGTCAGGGCGTTGTCGTGATCGACGAA 6661 Query 16441 GCGGCGTTCCACGAGTCCCTGGAGGAACTGCTGAAGGCCGCCCTGGCGCTGACGATGTGG 16500 || |||||||| | | | ||| || |||||||| || ||| |||| ||| ||| ||| Sbjct 6660 GCCGCGTTCCATGCGGACTTGGCCGAGCTGCTGAAAGCGGCCATGGCTCTGTTGATCTGG 6601 Query 16501 GGTAACAAGGTCCGCCTGATCAGCACCCACAACGGC 16536 || | |||| |||||||||||||| ||||| Sbjct 6600 GGCGGTGAAGTCCATGTGATCAGCACCCACGACGGC 6565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126564314978340