Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq1335 686 0.0 seq915 354 3e-93 seq3699 219 2e-52 seq6381 127 8e-25 >seq1335 Length=14169 Score = 686 bits (760), Expect = 0.0 Identities = 560/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Minus Query 11622 CCATTGTTCTCCAAATACAAAACCAATTTCTGCCAGTGCTTCGTCCATTTTGTCGATGAA 11681 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 9210 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 9151 Query 11682 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 11741 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 9150 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 9091 Query 11742 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 11801 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 9090 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 9031 Query 11802 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 11861 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 9030 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 8971 Query 11862 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTAAAGGGGCATTTAAGCTCAAGACCGTT 11921 || |||||||| |||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 8970 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 8911 Query 11922 ACCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 11981 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | || Sbjct 8910 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 8851 Query 11982 TATGGGTGTTTCCGAGACGGTAACATCCGCGATAAATTCAAAGAGGGCACGGGCATCATC 12041 || || | ||| | || | || | | |||| ||||| ||||| | ||| || | Sbjct 8850 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 8791 Query 12042 TTCATATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 12101 || || || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 8790 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 8731 Query 12102 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 12161 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 8730 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 8671 Query 12162 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 12221 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 8670 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 8611 Query 12222 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 12280 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 8610 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 8552 Query 12281 TAATTTCTGGTGTCATG 12297 |||| || ||||||||| Sbjct 8551 TAATGTCCGGTGTCATG 8535 >seq915 Length=38681 Score = 354 bits (392), Expect = 3e-93 Identities = 395/524 (75%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 3099 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3158 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 1613 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 1672 Query 3159 GGGGAACATCGCCAAGAAGTTGCACAAGTTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3218 | || ||||||||||| | ||||| || || |||| || ||||||||||| |||| Sbjct 1673 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 1732 Query 3219 GATCAAGGCGTGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3277 || ||||| || || |||| ||| |||| || |||| ||||| | ||||| Sbjct 1733 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 1791 Query 3278 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3337 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 1792 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 1851 Query 3338 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3397 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 1852 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 1908 Query 3398 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3457 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 1909 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 1968 Query 3458 CACCACATAGCCAACAGGCAATTCTCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3517 ||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 1969 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 2028 Query 3518 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3577 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 2029 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 2088 Query 3578 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3621 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 2089 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 2132 >seq3699 Length=658 Score = 219 bits (242), Expect = 2e-52 Identities = 169/201 (84%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 31696 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGAGATAAAAAAGTCAGAGAG 31755 || ||||||||||| ||||| | ||||||||||| ||||| || ||||| | |||||| Sbjct 443 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 502 Query 31756 CTGGAGCTGGCAAACGCAACCATTACTGATATGCAGGTGCGCCAGCGTGATGTTGCTGCG 31815 ||| ||||||| ||||| | |||||||| |||||| |||||||||||||||||||||| Sbjct 503 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCA 562 Query 31816 CTTGATGCTAAATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 31875 || |||| |||||| ||| ||| ||||| |||||| |||||||||||| |||||||| Sbjct 563 CTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGT 622 Query 31876 GCTGATGTTGCCGCTGGTCGT 31896 | || |||||||||||||||| Sbjct 623 GATGGTGTTGCCGCTGGTCGT 643 >seq6381 Length=773 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Plus Query 33142 TGCGCCGCATCGTCGCCGTATTCCCGCATTAACAGAGACCGCAGCC--ACC-----TTA- 33193 ||||| | ||||||||||||||||||||||||| ||||| |||| || || Sbjct 407 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAATTCC 466 Query 33194 -TCTGCGTGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTTTCA 33252 |||||||||||||||||| ||||||||||||||||||||||||||||| | | | | Sbjct 467 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTGA 525 Query 33253 CGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACCGG 33311 | ||| | || | || ||| | || ||| | ||||||||| |||||||||||||||| Sbjct 526 C-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACCGG 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200979356280968