Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028695.2 Length=40491 Score E Sequences producing significant alignments: (Bits) Value seq3178 158 3e-34 >seq3178 Length=10189 Score = 158 bits (174), Expect = 3e-34 Identities = 556/846 (66%), Gaps = 38/846 (4%) Strand=Plus/Plus Query 13474 TTCAACGCGGCTTCCGGTGGCGCTATCGTACTGTCTACCGCCGCCTGGCGTGGTGACTTC 13533 |||||||| || | ||||||| ||||| |||||| | | || || |||||||||| Sbjct 6876 TTCAACGCCGCAAGCCGTGGCGCAATCGTGCTGTCTCCTGACGGCTTCACTGGTGACTTC 6935 Query 13534 TCCCGCGAATCTTTCTTTAACCAGA---TTGCTTCCGCGAAACGTCGTGTTGACCGCTAC 13590 || || || ||||| ||||| | || | || | || || || || |||||| Sbjct 6936 CTCCAAGAGTCGTTCTT---CCAGACCTTGGCCGCTGCCCAGCGCCGCGTGGATCGCTAC 6992 Query 13591 GCCGCAATCGCTACCCAAGCGGCAACTGCTCTTACCCAG--GGCGAGCACGTAGGCGTTA 13648 | | | ||| | || ||||| | ||| || || | || || | || | | Sbjct 6993 AGCACGAACGCCGCTGTCGCTGCAACCGATCTGACTGAGCTGAAGAATACTTCGGTG--A 7050 Query 13649 AAGTCGCTGGTGGTTTCGGTCCTGTTCTGTTCGAACCGGCGCAAATGACCTGGCTGAA-C 13707 | ||||| ||||| |||||||| | | | ||| || |||| ||||| |||||| | | Sbjct 7051 AGGTCGCCGGTGGCTTCGGTCCGATCCGCTACGAGCCATCGCAGATGACTTGGCTGGAGC 7110 Query 13708 GAAGACCCGGCGTCCGCTATCCG---CGCGATTTCCGAAGGCTTCTCTGATGCGCTGCTG 13764 | | ||| || | ||| ||| | | || ||| |||| |||||| Sbjct 7111 GTCCAACCG-CGCAAGGCATCGAAGTCGCCAGTCGCGCG---TTCGCTGAAATCCTGCTG 7166 Query 13765 GCTGACCAGCTCAACACTGCGGTAGGCTCCGCTGTTGCCGCAGTGTCCGGCCAGGCTGCT 13824 |||||||| ||||| ||| | | | || |||||||| | ||| |||||| || Sbjct 7167 AAGGACCAGCTGAACACAGCGATCGCCGCCCTGGTTGCCGCGATCACCGCCCAGGCCGCC 7226 Query 13825 CTGGTTAATGACGTATCCGCAACCGGTGGTCTGACCCTGAACG-TG--CTGAACAACAGC 13881 ||| || || || || || |||| ||| | ||| ||| || ||||||||| Sbjct 7227 GCGGTCAACGATGTGTCGGCTACCGCTGGCATCACCT---ACGCTGGCCTGAACAACGCA 7283 Query 13882 CACGCTAAATTCGGCGAC-CAGTCACAGCTTCTGGTGACCGACGTTATGACCGGCGCGGC 13940 ||||| || ||||||||| || | ||| ||||| ||| | || ||| ||| || Sbjct 7284 CACGCGAAGTTCGGCGACGCAAGC-CAGAACCTGGTCACCCAGGTGATGCAGGGCACGAG 7342 Query 13941 ATGGCACAAGCTGATTGACAAGGCGCTGACCAACTCAAGC--CAGTTGTTCGCCTCCGGC 13998 | |||||| || ||| | || ||| | ||| ||| ||| ||||| ||||| Sbjct 7343 CTATCACAAGTTGGTTGGCCAGAACCTGGCGAACC--AGCAGCAGCTGTTCCAGGCCGGC 7400 Query 13999 AACGTTATGGTCGTTGATATCCTGGGTAAACGTTATGTTATCTCTGATATCCCGGCTCTG 14058 ||||| || || || || || || || | ||| | | ||| |||||| ||| Sbjct 7401 AACGTCCGCGTGGTGGACATTCTCGGCAAGATCTCCGTTGTGACGGATGCCCCGGCGCTG 7460 Query 14059 TACGAAG-CTGGTACCCCGAACAAGTCGAAAG--TGCTGTCTGTCGTGGCTAACGGTATT 14115 | | || | || |||||||||||| |||| | ||||| | ||| || | Sbjct 7461 -ATGCAGACCGGCACCCCGAACAAG--GAAATCATCCTGTCCCTGGTGCAAGGCGCTGCG 7517 Query 14116 ATCGTTGATAACGCGTCCGACATCATCAGCAACGTCGACAC-GTCAAACGGCAACACCCG 14174 ||||| | ||| ||||||||||||||||||| | || ||| |||||||| || Sbjct 7518 CTCGTTCACGACGGCCGCGACATCATCAGCAACGTCCAGACTGTC-AACGGCAAGGAGCG 7576 Query 14175 CATCCAGACCACCTGGCAGGCTGACTACACCTTCGGTCTGAAACTGAAGGGTTACTCCTG 14234 ||| | ||||| ||| | ||||||||||||||| || |||||||| ||| |||| Sbjct 7577 TATCGAAACCACGCTGCAAACCGACTACACCTTCGGTTTGGGCCTGAAGGGCTACACCTG 7636 Query 14235 GGACGTTGCGAACGGCGGCAAATCACCACTGGACGCAGAGCTGTTTACCGCGACCAACTG 14294 |||| | | ||||||||| || || ||||| || ||| |||| |||||||| Sbjct 7637 GGACACCACCACCGGCGGCAAGTCGCCTACCGACGCCGAACTGGCGACCGGTACCAACTG 7696 Query 14295 GGACAA 14300 |||||| Sbjct 7697 GGACAA 7702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129437649698364