Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq3699 556 3e-154 seq140 140 9e-29 seq3795 109 1e-19 seq1335 86.0 2e-12 >seq3699 Length=658 Score = 556 bits (616), Expect = 3e-154 Identities = 350/378 (93%), Gaps = 0/378 (0%) Strand=Plus/Plus Query 38430 TACAAAGACATCGTTGGTGTATGGACAGTGTGTTACGGGCATACAGGCAAAGACATCATA 38489 |||||||| || |||||||||||||| || ||| ||||||||||||| ||||||||||| Sbjct 3 TACAAAGATATTGTTGGTGTATGGACTGTATGTCACGGGCATACAGGAAAAGACATCATG 62 Query 38490 CCCGGTAAAACGTATACCGAGGCAGAATGCAAATCCCTCCTGAATAAAGACCTCGCTACT 38549 | |||||||||||||||| | |||||||||||| ||||||||||||||||||| || || Sbjct 63 CTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCACG 122 Query 38550 GTCGCCAGACAAATTAACCCGTACATCAAAGTCGATATACCGGAAACAACGCGCGGCGCC 38609 |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 123 GTCGCCAGACAAATTAACCCGTACATAAAAGTTGATATACCGGAAACAACGCGCGGCGCT 182 Query 38610 CTTTACTCGTTCGTCTACAACGTTGGATCTGGCAATTTCAGAACATCGACGCTTCTTCGC 38669 |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| Sbjct 183 CTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTCGC 242 Query 38670 AAAATAAACCAGGGCGATATCAAAGGTGCATGTGATCAGCTACGTCGCTGGACATACGCT 38729 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 243 AAAATAAACCAGGGCGATATCAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATGCT 302 Query 38730 GGCGGTAAGCAATGGAAAGGCCTGATGACTCGCCGTGAGATTGAGCGTGAAGTCTGTTTG 38789 |||||||||||||||||||| || |||||||| |||||||||||||||||| |||||||| Sbjct 303 GGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTTTG 362 Query 38790 TGGGGGCAGCAATGAACA 38807 ||||| |||||||||||| Sbjct 363 TGGGGTCAGCAATGAACA 380 Score = 334 bits (370), Expect = 2e-87 Identities = 217/238 (91%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 38903 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGTCTGTCATGGGCTGTTA 38962 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 384 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTA 443 Query 38963 ATCATTACCGTGATAACGCCATTACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAAC 39022 ||||||||||||||||||||||||||||||||| |||||||| ||||| | ||| |||| Sbjct 444 ATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAAC 503 Query 39023 TGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAGCGCCAGCGTGATGCTGATGCAC 39082 |||||| ||||| ||| | ||||||||||||||| |||||||||||||| || ||||| Sbjct 504 TGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCAC 563 Query 39083 TTGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCG 39140 | |||| ||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 564 TGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 621 >seq140 Length=20869 Score = 140 bits (154), Expect = 9e-29 Identities = 345/513 (67%), Gaps = 14/513 (3%) Strand=Plus/Plus Query 16928 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 16987 ||||||||||| | |||||||| | ||||||||| |||||||| ||||||||||||||| Sbjct 20004 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 20063 Query 16988 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 17047 ||||| || || || | ||| ||| | |||| ||| | ||| || | || | | | | Sbjct 20064 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 20123 Query 17048 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCAC--CCCGACGGGCTTACCAC 17105 | ||||| ||||| || || ||||| |||||||| || |||| |||| ||||| Sbjct 20124 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCG--CGGCTGACCAC 20181 Query 17106 GGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGT-CCGGCGAGAAC-GA 17163 | || | ||||| ||| || | | | || || || |||| | || Sbjct 20182 GCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTGA 20239 Query 17164 CATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCA 17223 || | |||||| | | | || || || || | || || || || || ||| Sbjct 20240 CAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACCA 20299 Query 17224 GCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCAC 17283 ||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| ||| Sbjct 20300 GCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCAC 20359 Query 17284 GGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTAT 17342 |||||||| || |||| | || | || ||| |||||| |||| | || ||| | Sbjct 20360 AGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTGT 20418 Query 17343 ACCG--GTAAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGC 17400 || | || ||| ||||||| ||| ||| ||| | |||||| || | || || Sbjct 20419 ACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGGC 20476 Query 17401 AAGCCAGCGCCCCATCTGGTAGCCTCTCTGGGT 17433 | | | || | |||| || ||| | ||||| Sbjct 20477 ACGGTAACGGCTCATCGGGACGCCGTTTTGGGT 20509 Score = 140 bits (154), Expect = 9e-29 Identities = 345/513 (67%), Gaps = 14/513 (3%) Strand=Plus/Plus Query 39553 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 39612 ||||||||||| | |||||||| | ||||||||| |||||||| ||||||||||||||| Sbjct 20004 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 20063 Query 39613 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 39672 ||||| || || || | ||| ||| | |||| ||| | ||| || | || | | | | Sbjct 20064 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 20123 Query 39673 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCAC--CCCGACGGGCTTACCAC 39730 | ||||| ||||| || || ||||| |||||||| || |||| |||| ||||| Sbjct 20124 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCG--CGGCTGACCAC 20181 Query 39731 GGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGT-CCGGCGAGAAC-GA 39788 | || | ||||| ||| || | | | || || || |||| | || Sbjct 20182 GCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTGA 20239 Query 39789 CATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCA 39848 || | |||||| | | | || || || || | || || || || || ||| Sbjct 20240 CAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACCA 20299 Query 39849 GCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCAC 39908 ||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| ||| Sbjct 20300 GCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCAC 20359 Query 39909 GGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTAT 39967 |||||||| || |||| | || | || ||| |||||| |||| | || ||| | Sbjct 20360 AGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTGT 20418 Query 39968 ACCG--GTAAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGC 40025 || | || ||| ||||||| ||| ||| ||| | |||||| || | || || Sbjct 20419 ACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGGC 20476 Query 40026 AAGCCAGCGCCCCATCTGGTAGCCTCTCTGGGT 40058 | | | || | |||| || ||| | ||||| Sbjct 20477 ACGGTAACGGCTCATCGGGACGCCGTTTTGGGT 20509 >seq3795 Length=1936 Score = 109 bits (120), Expect = 1e-19 Identities = 242/361 (67%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 16916 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 16975 || || ||||| || | ||| || ||||| || | || | ||||||||| || | Sbjct 1515 TAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGAG 1574 Query 16976 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 17035 |||||||||||||| || || |||||||| ||||| ||||||||| | ||| || | Sbjct 1575 TTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCGC 1634 Query 17036 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG 17095 ||||||||| | | ||| || || || ||||| |||||| || ||| |||| Sbjct 1635 TGCCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCGGAATGAAACCGCACCTGCTGT 1694 Query 17096 GGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGC 17155 ||||| || || || | ||||| || || || || || ||| | |||||| Sbjct 1695 GGCTTGCCGCGCTGCTCGTAGGCCATGTCGAGGGCCTTGATCACCAGCGCGGCATCCGGC 1754 Query 17156 GAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGG 17215 || | |||||||| | | | | | |||| || || || ||||| ||| Sbjct 1755 TTTGTGGAAAGCGCCCAGCCAATCGTCCGCCGGGTGTACAGATCCAGCACCACGGCCAGG 1814 Query 17216 TACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTG 17273 || |||||| ||| || |||||| ||||| | ||| |||||||| ||| | || | Sbjct 1815 TAATGCCAGCGACCTT--GCGCCCAGATGTAGGTGATATCGCCGCACCAAACCCGGTTCG 1872 Query 17274 G 17274 | Sbjct 1873 G 1873 Score = 109 bits (120), Expect = 1e-19 Identities = 242/361 (67%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 39541 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 39600 || || ||||| || | ||| || ||||| || | || | ||||||||| || | Sbjct 1515 TAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGAG 1574 Query 39601 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 39660 |||||||||||||| || || |||||||| ||||| ||||||||| | ||| || | Sbjct 1575 TTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCGC 1634 Query 39661 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG 39720 ||||||||| | | ||| || || || ||||| |||||| || ||| |||| Sbjct 1635 TGCCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCGGAATGAAACCGCACCTGCTGT 1694 Query 39721 GGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGC 39780 ||||| || || || | ||||| || || || || || ||| | |||||| Sbjct 1695 GGCTTGCCGCGCTGCTCGTAGGCCATGTCGAGGGCCTTGATCACCAGCGCGGCATCCGGC 1754 Query 39781 GAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGG 39840 || | |||||||| | | | | | |||| || || || ||||| ||| Sbjct 1755 TTTGTGGAAAGCGCCCAGCCAATCGTCCGCCGGGTGTACAGATCCAGCACCACGGCCAGG 1814 Query 39841 TACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTG 39898 || |||||| ||| || |||||| ||||| | ||| |||||||| ||| | || | Sbjct 1815 TAATGCCAGCGACCTT--GCGCCCAGATGTAGGTGATATCGCCGCACCAAACCCGGTTCG 1872 Query 39899 G 39899 | Sbjct 1873 G 1873 >seq1335 Length=14169 Score = 86.0 bits (94), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 4/78 (5%) Strand=Plus/Minus Query 22734 CTCCATAAAACAAAACCCGTCGTAGCGAGTTCAGACAAAATAAATCCCCGCGAGTACGAG 22793 ||||||||||||||||||| ||||||||||||||| |||| |||||| || ||| |||| Sbjct 11219 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11160 Query 22794 GATG----TTATTGCTGC 22807 |||| | |||||||| Sbjct 11159 GATGCTGTTCATTGCTGC 11142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132147799484400