Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq1335 1728 0.0 seq3699 127 5e-25 >seq1335 Length=14169 Score = 1728 bits (1916), Expect = 0.0 Identities = 1623/2060 (79%), Gaps = 11/2060 (1%) Strand=Plus/Minus Query 25997 TGCGTCATCGCCACTGCTCCCCGAACGTGAAGCCAATCTCCTTTAGCGCTTCGTCCATCT 26056 ||||||||||||| |||||||| || || ||||| || || || |||||||| | Sbjct 9220 TGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTT 9161 Query 26057 TTTCGATAAATTCCGGTACCATTTCGTTGAAGAGGGACATGTATTTGTCGTCTCGCTCAA 26116 ||||||| || ||||| ||||| |||| || | |||||| || || || ||||||| Sbjct 9160 TTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAA 9101 Query 26117 CAACCACGTGGTGGATACCTTCTCGTTTCATGCGCGGGTCATAATTCGCGAAATACCATG 26176 | || || | || | ||||| || ||||| || |||||||| || || || ||||| | Sbjct 9100 CCACGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGG 9041 Query 26177 CATCTCTCCCGGTTACCCACATGCTGAATTGCACCTGGGCCATATAGGCGGATTTGATAG 26236 ||||| | | || |||||||||||| | |||||||||||||| || || || || || | Sbjct 9040 CATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGG 8981 Query 26237 CCTCGAAGCCGCCAAGCCTGAATTTCATAAAGTCGCGAGAGGTGAAAGGGCACTTCAACT 26296 ||||||| || || |||| ||||||||| || || || ||||| || ||||| |||| | Sbjct 8980 CCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTT 8921 Query 26297 CAAGACCGCGGCCATCACTGCACAGGCCGTCAGGAGAACAGGCGGTACGCATGCCCTCGT 26356 |||| ||| ||| |||||||| | || || ||||| |||||||| ||||| | |||| Sbjct 8920 CAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGT 8861 Query 26357 CACGGAAAAGGATCGGCGACCCGGTGACCTTCACGTCAGTGGTGAACTCAAACAGGGTGC 26416 | || | | |||||| || | || || |||||| | | || ||||||||||||| | Sbjct 8860 CGCGATAGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTC 8801 Query 26417 GAGCATCGTCCTCATACTGTTTCCCCCAGGCCAGCGCCTTGGCGTTAACTTCCGGTGCCA 26476 || |||| ||| |||||||| ||||||||||||||||| || ||||||||||| |||| Sbjct 8800 TGGCGTCGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCA 8741 Query 26477 CGCCGGTGCAAACTTCGGCAAGAAGGGTGAGAAAGTAGGACATCTTCATATCAGTCCACT 26536 | ||||||||||| || || || |||||| | ||||||||||| ||||| |||| ||||| Sbjct 8740 CACCGGTGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACT 8681 Query 26537 TCTTGCCCGACTTTGGCCTGGAAATGACGTTGTGAACTTCGGAAGCAGTGATGACACCGA 26596 |||| || || ||| | | || |||||||||||||| ||||| |||||||| |||| Sbjct 8680 TCTTTCCTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGA 8621 Query 26597 GGCGTAGACGGTGCCACGCGTCATCACCTTGCTCGATGTTGCTAACGTCAATACCTGTAC 26656 | |||| |||||| || ||||| || || |||| || ||||| || || |||| Sbjct 8620 GCCGTAATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTAC 8561 Query 26657 GAGCCAGGATAATTTCTGGTGTCATGCTTCCACCTTCTGTTCTGCAGCTTTCTGTTTCAG 26716 | ||||||||| || ||||||||||| |||||||||| || | |||||||||||||| Sbjct 8560 GCTGCAGGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAG 8501 Query 26717 GAATCCGAGGGCTTTCACTGCTTCGATTTGCGTAAGATCTGACGATGCACCAATATCGCG 26776 |||||| || ||||||||||||||| || || || ||||||||||| | ||| ||||| Sbjct 8500 GAATCCAAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCG 8441 Query 26777 GCGGAAGATTTGGGAGCAGAGCGGCAGCAGATCGTCATCCCATGTTTTATTCATGGTGAT 26836 ||| || || ||||| |||||||||| | ||||||||||||||||||| || || ||| Sbjct 8440 GCGAAATATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGAT 8381 Query 26837 CAGCAGATCATTAATTTCCCGCATGGTTTCATCGCTAACCGGAGTGATGTCGCGTTCCGG 26896 ||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 8380 CAGCAGAGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGG 8321 Query 26897 CTGGCGATCTGTGGTATACGTGGTATTTTCGACAATGCGTTCGGCCTCATCCTTGTCGTA 26956 ||| || |||| || || | |||||||||||||||||| ||||| ||||||||||| || Sbjct 8320 CTGACGTTCTGCAGTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATA 8261 Query 26957 GATGCCTGCGAAACCGAAGGCAAGACGGGCGCACTGGATCATTGCTTTGTGTCGCAACAT 27016 ||| || || || |||||||| |||||||| ||||| ||||| ||||| || || ||||| Sbjct 8260 GATACCAGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGACGTAACAT 8201 Query 27017 CCGTTTGGGATGTGACTGCCACGGTCCAGTAATCTCACGACCATCACGGGTTTTGAATGG 27076 |||||||||||| |||||||||||||| || || || | || || |||||||||||||| Sbjct 8200 CCGTTTGGGATGCGACTGCCACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGG 8141 Query 27077 TTCCCGGCGACATTCATCCATCCATTCGGTAACGCAGATCGGATGGTTACGGTCCTTACG 27136 ||| ||||| |||||||||||||| |||||||||||||||||||| || |||||||| || Sbjct 8140 TTCGCGGCGGCATTCATCCATCCACTCGGTAACGCAGATCGGATGATTGCGGTCCTTGCG 8081 Query 27137 GTAAATCCTGCATGTACATGATTCGTTATCCTGCTCAAAATCCATACCGTCAAACTGCTG 27196 |||||||| |||||| || ||||| || ||||||||||| |||||||| ||||||||||| Sbjct 8080 GTAAATCCGGCATGTGCAGGATTCATTGTCCTGCTCAAAGTCCATACCATCAAACTGCTG 8021 Query 27197 GTTTTCGTTGATGATACGGGACCAGCCATCAACACCCACCACAGGGACGATCCCGTTCTG 27256 |||||| |||||||| ||||||||||||||||| |||||||| || ||||| |||||||| Sbjct 8020 GTTTTCATTGATGATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTG 7961 Query 27257 CTTATCAGGAAAGGCGTAAATTTCTTTCGTCCACGGATTAAGACCGTACTGGTTGGCGAC 27316 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 7960 CTTATCAGGGAAGGCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGAC 7901 Query 27317 TATCAGTAGCGCAATAAACTGCGCATCACTGGCGTCACCTTTAAAAGCTGTCTGGCGCAA 27376 ||||| | || || ||||||||||| ||||| || |||||||| || |||||||| | Sbjct 7900 GATCAGCAATGCGATGAACTGCGCATCGCTGGCATCGCCTTTAAATGCCGTCTGGCGAAG 7841 Query 27377 TGTGGTGATCAGTTCCTGCGGATCTACAGAATCCATTCCTACACGTTCTGCCAGCTTTCC 27436 ||||||||||||||||| || || ||||||||||| || |||||||| |||||||| || Sbjct 7840 AGTGGTGATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCC 7781 Query 27437 TGCCAGTGTTGCGAGTGCTGTGCTCATTTGTCTTATTCCTCTGATTCAATATCAATTTGA 27496 ||||| |||||||||||||| ||||| || |||| ||||||| |||||||||| ||| Sbjct 7780 AGCCAGCGTTGCGAGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAACCTGA 7721 Query 27497 TGCCGGGAAAACACTTCAACCATGTACCGCACAAACTCCGACGCACGCTCCTGGAACTCG 27556 || | | || ||||||||||||||| | || | | |||||||| ||||| Sbjct 7720 TGGTGAGCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGCTCCTGAAACTCA 7661 Query 27557 ACATCGTCATCAAATGCACGGCTGATCGCCTTTTTGTTGGCGCCGTGGCGCGGTAACTCG 27616 ||||||||||||||||||||| | || || |||||| |||| ||| ||| |||| | Sbjct 7660 ACATCGTCATCAAATGCACGGGTAATGGCTTTTTTGCTGGCCCCGCAGCGTTGTAAATGA 7601 Query 27617 TCCATACACAGCGACTCCAGCATGTGAAGCGACAGTCCTTTCTCCAGGTCGTCAGCCAGT 27676 || || || ||||| || | || || | | ||| ||||| |||| |||||| |||||| Sbjct 7600 TCGATGCAGAGCGATTCAAACAAATGCTGGGGCAGGCCTTTGTCCATGTCGTCTGCCAGT 7541 Query 27677 TCGGACTCTTTCTCTTCTCTGGCGATTTGCTGGTAATGCCGGGTCCAGTTCTGAGCCTCG 27736 || | |||||||||||| | |||||| |||||||| || || | |||| |||||||||| Sbjct 7540 TCTGCCTCTTTCTCTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGCCTCA 7481 Query 27737 ATCCGGTCGTAAGTGAGATATGCGTTCATGGCTGAACTCCTGAATTTTG-TTTGCAGA-A 27794 | || || | | || ||| ||||||||||||||||||||||| | | | || | | | Sbjct 7480 AGACGATCCTGAATGTAATAAGCGTTCATGGCTGAACTCCTGAAAATGGCTGTGAAAATA 7421 Query 27795 TCCCCTGCGCGATGAAAGCC-GCCTGATAGCTCAGTTAAATTCTTTGTTTCTATTACCGG 27853 || || ||||| || ||| | |||| | || ||| ||| | Sbjct 7420 TCGCC--CGCGA--AATGCCAGGCTGA----TTAGGAAAACAAGAAAGGGGGGTTAGTGA 7369 Query 27854 CTGAGGCCTTGGCCAAACCCGTTCAAATAGACTTCAACCAGCAAATCGGTTGTGTAAGTG 27913 | ||||| | || |||| | | | ||||| || |||||||| || |||||| Sbjct 7368 TTCAGGCCGTTACCGCGTCCGTCGAGAAAAACTTCCACGAGCAAATCACGGGTATAAGTG 7309 Query 27914 CGCTCAATGCCGCGATGCAGGTAGAGGCGACCGCGTTTGTTTGCTGATGCAGTCCAGGTG 27973 ||||| |||||||||||||| || || || |||||| || ||||||||||||||||| Sbjct 7308 CGCTCGATGCCGCGATGCAGATAAAGCCGTCCGCGTAAATTAGCTGATGCAGTCCAGGTA 7249 Query 27974 CCTTCACGATGCTTTACGAGCATTCCGGGCATAACGGCACCGCGGTTAACGGTCTGGGTT 28033 || || || || || |||||||| ||||| || ||||| || ||||||||||| ||| Sbjct 7248 CCATCTTTGTGTTTGACCAGCATTCCTGGCATGACCGCACCTCGATTAACGGTCTGCGTT 7189 Query 28034 CCATAGTGATGACTAATCAT 28053 || || || ||| || ||| Sbjct 7188 CCGTAATGTTGATGAACCAT 7169 Score = 919 bits (1018), Expect = 0.0 Identities = 898/1156 (78%), Gaps = 6/1156 (1%) Strand=Plus/Minus Query 30921 CACAAAAGACAAACTAACAAAAGACAATATTAAAAGATCTACGTCCGAGAATTCTGACGA 30980 |||||||||||||||||||||||||||||| ||| | | ||||||||||||||||||| Sbjct 3669 CACAAAAGACAAACTAACAAAAGACAATATAAAACCTTTTTCGTCCGAGAATTCTGACGA 3610 Query 30981 ATCCTCTGACAAGCCAAGAAAGAAACCTCATGTTCTAAAACCCGAAGCAGCGATTCAGAG 31040 |||||||||| ||||| ||| | | || ||| | ||||| || || || |||||||| Sbjct 3609 ATCCTCTGACCAGCCAGAAAACGATCTTCCTGTGATGAAACCGGATGCTGCAATTCAGAG 3550 Query 31041 AGGCAACAAGTGGGGAACTGCTGAAGACCTAACTGCTGCCGAGTGGATGTTTGACCTGAT 31100 |||| ||||||||| || || |||||||| || || || ||||||||||||||| || | Sbjct 3549 CGGCAGCAAGTGGGGGACAGCAGAAGACCTGACCGCCGCAGAGTGGATGTTTGACATGGT 3490 Query 31101 AAAAACCATTTCTCCATCAGCCAGAAAACCTAACCTGGCAGGATGGGCTAACGATATACG 31160 || ||||| | ||||||||||||||||| || | ||||| |||||||||||||| || Sbjct 3489 GAAGACCATCGCGCCATCAGCCAGAAAACCGAATTTTGCAGGGTGGGCTAACGATATCCG 3430 Query 31161 CCTGATGCGTGAATGTGACGGACGAACACATCGCGACATGTGCGTGCTGTTTCGCTGGGC 31220 ||||||||||||| |||| ||||| | || |||||||||||||||||||| |||||||| Sbjct 3429 CCTGATGCGTGAACGTGATGGACGTAACCACCGCGACATGTGCGTGCTGTTCCGCTGGGC 3370 Query 31221 GTGCCATGACAGCTTCTGGGCTGGCAACGTCATTAGCCCGGCAAAGCTCCGCGAAAAGTG 31280 ||||| |||| ||||||| | || ||||| | || ||||| || |||||||| ||||| Sbjct 3369 ATGCCAGGACAACTTCTGGTCCGGTAACGTGCTGAGTCCGGCTAAACTCCGCGACAAGTG 3310 Query 31281 GACTCAACTCGATATCAACCGCAACAAGCAACAGACTGGCACAACTGCCTCTAAGTCAAA 31340 ||| || ||||| |||||||| |||||||||||| ||||| || ||| || |||| Sbjct 3309 GACCCAGCTCGAAATCAACCGTAACAAGCAACAGGCTGGCGTGACAGCCAGAAAACCAAA 3250 Query 31341 ACTTGACCTGAATAACACTGACTGGATATACGGAGTGGAGCTATGAAAAACATTGCTGCG 31400 ||| ||||||| |||||||||||||| ||||| ||||| |||||||||||| || || Sbjct 3249 ACTCGACCTGACAAACACTGACTGGATTTACGGGGTGGATTTATGAAAAACATCGCCGCA 3190 Query 31401 CAGATGGTTAATTTTGACCGTGAGCAGATGCGCCGTATTGCCAACAACATGCCGGAACAG 31460 ||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 3189 CAGATGGTTAACTTTGACCGTGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAACAG 3130 Query 31461 CATAACGATAAGCCGCAAGTTGAGCAGGTTGCTAAGGTCATCAACAACGTGTTTAGTCAG 31520 | |||| |||||||| || | ||||| || || |||||||| ||||| || ||| Sbjct 3129 TACGACGAAAAGCCGCAGGTACAACAGGTAGCGCAGATCATCAACGGTGTGTTCAGCCAG 3070 Query 31521 CTTATGGCAGCGTTCCCTGCTACCACAGCTAATCGCAGCCAGGCTGAGATGAACGAAATC 31580 | ||||| | ||||| || | | ||||| || |||| ||| ||||||||||| Sbjct 3069 TTACTGGCAACTTTCCCGGCGAGCCTGGCTAACCGTGACCAGAATGAACTGAACGAAATC 3010 Query 31581 CGGCGTCAGTGGGTTCTGGCTTTCCGTGAGAACGACATCACCACCATGGAGCAAGTTGCG 31640 || || |||||||||||||||||||| || |||| |||||||| ||||| || ||| Sbjct 3009 CGCCGCCAGTGGGTTCTGGCTTTCCGGGAAAACGGGATCACCACAATGGAACAGGTTAAC 2950 Query 31641 GCCGGAATGCGTGTCGCCCGCCGTCAGGAACGTCCGTTTCTTCCGTCTCCAGGCCAGTTT 31700 || |||||||| || ||||| || ||| | || || || || || || || || |||||| Sbjct 2949 GCAGGAATGCGCGTAGCCCGTCGGCAGAATCGACCATTCCTGCCATCACCCGGGCAGTTT 2890 Query 31701 GTCGCATGGTGTAAGGCTGAATTGGCAACTGCT---GCCGGGCTTCCTGATGCCAATGAA 31757 ||||| ||||| || ||| ||| | | | |||||||| || | | || || Sbjct 2889 GTCGCCTGGTGCCGGGAAGAA---GCATCCGTTAACGCCGGGCTGCCAAACGTCAGCGAG 2833 Query 31758 CTGGTCGATATGGTTTACCAGTATTGCCGCACGCGTGGTTTATACCCGGATGCAGAATCA 31817 ||||| |||||||||||| |||||||||| | |||||| | || ||||||||||| || Sbjct 2832 CTGGTTGATATGGTTTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCT 2773 Query 31818 TATCCATGGGAATCCAAAGCCCATTACTGGCTTGTCACCACACTGTACTCAAACATGCGA 31877 ||||| ||| |||| || || ||||||||||| || |||| |||||| |||||||| Sbjct 2772 TATCCGTGGAAATCGAACGCGCATTACTGGCTGGTTACCAACCTGTACCAGAACATGCGG 2713 Query 31878 GCTAACGCTCTTAGTGATACCGAGTTGCGCCGCAAGGCAGTCGAAGAACTCAACCACATG 31937 || || || |||| |||| | || || || |||||||| | ||| ||||| | ||| Sbjct 2712 GCCAATGCGCTTACTGATGCGGAATTACGGCGCAAGGCTGCCGATGAACTGTCCTGTATG 2653 Query 31938 GTTACCAGGATAAACCGTGGAGAGGTGATCCCGGAGCCAGTTAAGCAGCTTCCTGTTCTT 31997 | | || |||||||| |||| ||| || || ||||| || ||||||||||| | Sbjct 2652 ACCGCGCGAATTAACCGTGGTGAGGCGATACCTGAACCAGTAAAACAGCTTCCTGTCATG 2593 Query 31998 GGTGGCAGACCACTAAACCGCGCGCAAAACCTCGCGAAGATTGCAGAAATTCGGGCCAAA 32057 || || ||||| ||||| || || || || |||||||| |||||||| || || Sbjct 2592 GGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATCAAAGCTAAG 2533 Query 32058 TTCGGACTAAAGGGAG 32073 || || || || |||| Sbjct 2532 TTTGGGCTGAAAGGAG 2517 Score = 158 bits (174), Expect = 3e-34 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 30472 GGAGTAATTATGGCAAACACTGCCGAAGTAATCAATTTTCCTGTGCCTGACGTGGCACCT 30531 |||| |||||||||||||||||| || || |||||||||| ||||| || ||||||| Sbjct 4142 GGAGGAATTATGGCAAACACTGCTGAGATATTCAATTTTCCAGTGCCGGATGTGGCACAA 4083 Query 30532 AAGGAGCCGCGCGTGGCAGATCTCGATGATGGCTATACGCGCCTGGCAAATGAACTTCTG 30591 ||||||| |||||||||||||||||| ||||| ||||||||| | |||||||| | ||| Sbjct 4082 AAGGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTG 4023 Query 30592 GATGCCGTGATGTGTTCTGGTTTGCCGGAGACTGAGCTGTGCATCCTGATGGCCGTATGG 30651 || || |||||| | || || | || |||| || | |||| || | Sbjct 4022 GAAGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATG 3963 Query 30652 CGCAAAACGTATGGATACAACAAGAAAATGGACTGGATCAGCAACGAGCA 30701 |||||||| ||||| | || || | | |||| ||| | ||||||||||| Sbjct 3962 CGCAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCA 3913 >seq3699 Length=658 Score = 127 bits (140), Expect = 5e-25 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 39837 AATCACTACCGCAATAACGCTATCACTTACAAGGACCAGCGCGACACCGCTACCCACAAG 39896 ||||| ||||| ||||||| || || ||||| | ||||||||||| | || | Sbjct 443 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 502 Query 39897 CTGACACTGGCGAACGCGACAATTACCGACATGACGAAGCGCCAGCGTGACATTGCCGCC 39956 |||| |||||||||||| ||||||| |||||| || |||||||||||| |||| || Sbjct 503 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCA 562 Query 39957 CTCGATGCAAAATACACGAAGGAACTAGCTGATGC 39991 || |||| ||||||||||||||| ||||| |||| Sbjct 563 CTGGATGAAAAATACACGAAGGAGTTAGCTAATGC 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130234376140776