Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028701.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq1445 129 1e-25 >seq1445 Length=14432 Score = 129 bits (142), Expect = 1e-25 Identities = 321/482 (67%), Gaps = 8/482 (2%) Strand=Plus/Plus Query 282 CCCAGCCAGTCGTTTAACTCTTTCAGGCTTTCTTGTATCGGGGCCAGTTCGTTGATGGAA 341 |||||||| ||||| | || ||| || | || | ||| |||| ||||||| | Sbjct 11812 CCCAGCCACTCGTTGACCTGGGCCAGCCTCGCCTGCAACGGCTCCAGCTCGTTGACCGCC 11871 Query 342 AACACCTTCGCCGCTTTCT-CTACGTCGCCGAAGCCACCGGAGTTATTCGGCATTACCCC 400 | |||| || || | | | ||| | || || || || | ||| | ||||| | || Sbjct 11872 CAAACCTCAGCAGCCTCCCGCAACGAC-CCAAAACCGCCCGCGTTCTGCGGCACGATGCC 11930 Query 401 CATCAGAACGGGCGGCACACGGTGCGCGGCTAACAGGTCGTCGCGGGTGGCGTCTTTGAT 460 ||||| || || | || ||| || | ||| ||||| ||| || || |||||| Sbjct 11931 CATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAGATCGTCACGGCTGATGTTTTTGAT 11990 Query 461 GCCGGTAAACTCATCCTTCGCCGCCACCTGGCTGAACGGCATAATTTGCAGGCCGTCTTT 520 | | || || ||||| ||||| |||| ||| | ||| || | || | ||||||||| Sbjct 11991 CGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCACCGGGATGAGCTGAATGCCGTCTTT 12050 Query 521 TTTCCCGCCCGCCGCGTAGACAAACAGGTTTTTAAAAGCACCGTTGCC---GCGAGCATC 577 || || ||| |||||| ||||||||| || |||| | | ||| |||| | Sbjct 12051 CTTGCCTGCCGGCGCGTACACAAACAGG-TTGCGAAAGTTGCCTGGCCCTTTCGAG--TT 12107 Query 578 TTTCAGCGACTTTTTAAGCTTTTCCACATCGTTATTATTCGCCACCGGGTCAGTGAGGTA 637 ||||| | | || || | || | | ||| | ||| ||| || | ||| Sbjct 12108 CTTCAGTGCGGTGCGCAGTGAGTCGATGTCCTCTTCCTTCTGCGCCGCGTCGGTCATGTA 12167 Query 638 GACGATCACACCCGCATGACTGCCGTTAATGTAGTAGTTGCGGCGGAACACCGTTGCTTC 697 | || | ||| ||||| |||||||| ||||||| ||||| ||||||| ||| || Sbjct 12168 CAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGTACTTGCGCCGGAACAGCGTGGCGCT 12227 Query 698 ACCGTTCAGCATGGCGCTTTGTAGCGCGGCCAGATATTCCGGCGCGCCGTAGATCTCCTG 757 |||| |||| |||||||| ||||| ||||| | |||||| ||||||||| ||||| Sbjct 12228 CTCGTTGAGCAGTGCGCTTTGCAGCGCTGCCAGCCACTCCGGCAGGCCGTAGATTTCCTG 12287 Query 758 GT 759 || Sbjct 12288 GT 12289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107097312264948