Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq654 145 3e-30 seq2590 100 1e-16 >seq654 Length=148201 Score = 145 bits (160), Expect = 3e-30 Identities = 322/478 (67%), Gaps = 10/478 (2%) Strand=Plus/Plus Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGAC 32738 ||||| ||||| | |||| ||||||| ||| ||||||||||| ||| | || || Sbjct 11382 AAGGCCAAGCTGATCGTCGTCGACGAGTGCTCGATGGTGGACGAACAGCTCGGCCGCGAT 11441 Query 32739 CTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTC 32798 || || |||||| || || || | ||||||||||| | ||||||||||||| | Sbjct 11442 CTCATGAGCTTCGGCACCCCCATTCTGGTGCTGGGCGACCCTGGCCAGCTGCCGCCCATA 11501 Query 32799 ATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGA 32858 || | ||| ||||||||| | || || | || ||||| || | ||| |||||||| Sbjct 11502 TCCGGCGGCGGCTTCTTCACCGAACACGAGCCGGATTTCCTGCTCAGCGAAATCCACCGG 11561 Query 32859 CAGGCCCGCGACAACCCGATCATCGAGATGTCTCGCATCGTCCGCGAAGGCGGTGCCCT- 32917 ||||| ||||||||||||||| | || | | | ||| ||||| || ||| | Sbjct 11562 CAGGCGCGCGACAACCCGATCCTGCGCCTGGCGCTCGACGTGCGCGAGGGACGTGAATTC 11621 Query 32918 GTCCCTGGGTCG-CTACGGGGAGAGCGAGGTGGTGCGCATGGCTGACTTCCAGCGCGACT 32976 | | ||| || | ||| | | | |||| | || | || | || || Sbjct 11622 GGCTATGG--CGATTTCGGTGCGGCCAAGGTCATCTCCAAGAACGAGGTGACGCAGGATC 11679 Query 32977 GGGTGTTCCAGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCTACAACC 33036 |||| || ||||| ||| | ||||| || | |||| ||||||||| ||| || | Sbjct 11680 TGGTGCTCGGCGCCGATCAGGTGCTGGTGGGTACGAACCGCACCCGCCGCCGCTATAATC 11739 Query 33037 GCCGCATCCGCGAGCTCCGAGG---AGCCGCTCAGGCGTACCCGCACCAGGGAGACAAGC 33093 ||| | ||||||||| ||| ||||| | | ||||| ||| ||||||| Sbjct 11740 AGCGCCTGCGCGAGCTCAAAGGTTTTTCCGCT---TCCTTTCCGCAGGCGGGCGACAAGC 11796 Query 33094 TGGTCTGCCTGCGGAACAACCACGACTCTGGCCTGCTGAACGGCTCGCTCTGGACGGT 33151 |||| |||||||| ||| | | | | || ||||| ||||||||||| |||| ||| Sbjct 11797 TGGTGTGCCTGCGCAACGATCCGGCCAAGGGGCTGCTCAACGGCTCGCTGTGGAAGGT 11854 >seq2590 Length=2778 Score = 100 bits (110), Expect = 1e-16 Identities = 289/436 (66%), Gaps = 18/436 (4%) Strand=Plus/Plus Query 5822 ACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCAT--CCA 5879 ||||| | | | || || |||||| || || || || ||||||| ||||||| | || Sbjct 510 ACGACATCAACTTCGGCATCGGCCCTGCCGGTACCGGCAAGACCTACCTGGCCGTGGCCT 569 Query 5880 CCACGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGC 5939 | ||| | ||| |||||| || | || | | ||| || | | || || || Sbjct 570 GCGCGGTCGATGCC--CTGGAGCGCGAGCAGGTGCGACGCATCCTGCTGGTGCGTCCGGC 627 Query 5940 CGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACC 5999 || || || | |||||||| ||||| |||||||| ||| | ||||||| | || Sbjct 628 GGTGGAAGCCGGCGAGAAGCTGGGCTTTTTGCCCGGCGACCTGGCCCAGAAGATCGACCC 687 Query 6000 CTACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGCC-CGACGA--TGACGAA 6056 ||||| |||| | |||||| | ||| || ||||| ||| | || | || Sbjct 688 GTACCTGCGCCCGCTCTACGACGCGCTCTACGAGATGCTCGGCTTCGAATACGTGGCCAA 747 Query 6057 GCGCCTCCTCGAGTCGCGCCAGCTG---GAGGTCGCCCCGCTGGCCTACATGCGAGGCCG 6113 || | ||||| |||||| || ||| |||||||||||||||||||||| ||||| Sbjct 748 GC---TGATCGAG---CGCCAGGTGATCGAGATCGCCCCGCTGGCCTACATGCGTGGCCG 801 Query 6114 GACGTTCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCACC-CCGCGCCAGA 6172 ||| | ||| ||| | |||| | ||||| | |||||| ||||| || | |||| Sbjct 802 TACGCTGAACAACAGCTTCATCATTCTCGACGAAAGCCAGAACACCACCGTCGAG-CAGA 860 Query 6173 CCGCGCTGCTGGTGACCCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGG 6232 | || | ||||||| | || ||||| | | ||||| | | ||| ||| Sbjct 861 TGAAGATGTTCCTGACCCGGATCGGTTTCGGCTCCACCGCCGTGATCACCGGCGACGTCA 920 Query 6233 CCCAGTGCGACCTGCC 6248 ||||| ||||||||| Sbjct 921 CCCAGGTCGACCTGCC 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191470322545920