Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq385 147 7e-31 seq3888 145 2e-30 >seq385 Length=624889 Score = 147 bits (162), Expect = 7e-31 Identities = 262/380 (69%), Gaps = 2/380 (1%) Strand=Plus/Plus Query 40035 AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGA 40094 ||||| | || ||||||||| | |||| || | || |||||||| | | |||| Sbjct 407146 AGGGCATTTCGAGCACGCGGCCGACGTCGCGCAGCACGGCGCGCGCCTGCAGCGTTCCGA 407205 Query 40095 AGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCT 40154 |||| |||||| || |||| ||| || ||||| | || || |||||||||| Sbjct 407206 AGGTGATGATCTGCGCCACCTGATCGCGGCCATACTTGGCCTGAACATAGCGGATGACCT 407265 Query 40155 CGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGT 40214 || |||| ||| | | |||||| ||||||| ||||||||| || ||||| ||||| | Sbjct 407266 CGTCGCGCCGCTCCTGACAGAAGTCAATGTCAAAGTCGGGCATCGAGACGCGGTCGGGAT 407325 Query 40215 TCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-G 40273 | ||||| || ||||| | || | ||| ||||||| |||||||||| || | Sbjct 407326 TGAGGAAGCGTTCGAACAGCAGGGAGAAGCGCAGCGGATCGACGTCGGTGATCGTCAGCG 407385 Query 40274 CAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTC 40333 || ||||| || |||||||| || | ||||| || || |||||||| | | | Sbjct 407386 CA-TAGGCAACGAGCGAACCCGCACCGGAGCCACGACCGGGACCGACAGGAATATCATGG 407444 Query 40334 TCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGG 40393 | || ||||| ||| ||||||| |||| |||||||| ||| | |||| || Sbjct 407445 GCTTTCGCCCATTTGATAAAGTCGGAAACGATGAGGAAGTAACCCGGATATTTCATCCGG 407504 Query 40394 ATGATCATGTCGATCTCGTA 40413 |||| ||| ||||| || Sbjct 407505 GTGATGATGGAAATCTCATA 407524 >seq3888 Length=2482 Score = 145 bits (160), Expect = 2e-30 Identities = 208/291 (71%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 40123 CCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACG--CCGGTCATCGAAGTCG 40180 |||||| ||||||| |||||| || ||| | |||||| || || ||||||| Sbjct 1217 CCCGTATTTCTCGGCCACGTACTCAATAACCCGGTCGCGACCATCCATGCA--GAAGTCG 1274 Query 40181 ATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCG 40240 | ||| | ||||||||| || || || || ||||| ||||| || ||||| | || | Sbjct 1275 ACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAGCAGGTCA 1334 Query 40241 TGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCC 40300 | ||||| || ||||||||||||||| | ||||| |||||||| ||||| || Sbjct 1335 TATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCCGGCACCC 1394 Query 40301 GAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCG 40360 || || || || || || || ||||||||| |||||||| ||| ||||| Sbjct 1395 GATCCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAAGTCCATT 1454 Query 40361 ACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40411 |||| ||||||||| ||||| ||||||||||| || || || | |||| Sbjct 1455 ACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 1505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160391591882676