Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq2068 248 4e-61 seq848 212 3e-50 seq6252 125 3e-24 >seq2068 Length=4790 Score = 248 bits (274), Expect = 4e-61 Identities = 455/664 (69%), Gaps = 7/664 (1%) Strand=Plus/Plus Query 66471 CCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66530 |||| |||||| | | ||||||| ||| || ||||| || || || | ||||| Sbjct 4130 CCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 4189 Query 66531 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66590 | || || |||||||| || |||||||| || || | || ||| || | | | | Sbjct 4190 TCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTG 4249 Query 66591 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 66650 || | || || || || | || | || | | |||| || |||||| ||||||| | Sbjct 4250 CCCAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATC 4309 Query 66651 CTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGA 66708 |||| |||||| ||| ||| || || || | ||| |||| |||| || || || Sbjct 4310 CTGAATACGCC--GGCAAGCTGGGCGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGA 4367 Query 66709 TACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCAT 66768 ||||| ||||| || ||||| ||| ||| | || || || || | | | Sbjct 4368 CACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGACGT 4427 Query 66769 CGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 66828 |||| || ||||||||||| |||||||| || || || |||||||||| || || Sbjct 4428 GATCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGG 4487 Query 66829 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGG 66888 |||| ||||| ||||| || || ||| | ||||| |||||| |||| || |||| || Sbjct 4488 CGACATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGG 4547 Query 66889 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 66948 | |||| | | ||||| || | ||| |||||||| | || ||||||||| Sbjct 4548 TAACATCAAGAACGCCAACTGCTTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGG 4607 Query 66949 CAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGC 67008 | || | | ||||| || |||||||| || || || || ||| ||||||||| Sbjct 4608 CGTGATGTTCGGCAGCCCG---GAAACCACCACCGGGGGTAACGCGCTGAAGTTCTACGC 4664 Query 67009 CTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 67068 || |||||| |||| ||||||| | | | | | ||||||||| || |||| ||| || Sbjct 4665 TTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTTGG 4724 Query 67069 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGA 67128 | | ||||| || || ||||| ||||||||| ||||||||||| ||| | ||||| Sbjct 4725 TAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGA 4784 Query 67129 GTTC 67132 |||| Sbjct 4785 GTTC 4788 >seq848 Length=108724 Score = 212 bits (234), Expect = 3e-50 Identities = 420/619 (68%), Gaps = 7/619 (1%) Strand=Plus/Plus Query 66497 GCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCT 66556 ||||| ||| | || || |||| ||||| | || || || ||||| || ||| Sbjct 34621 GCCCTTGGCGTTGGCGGTCTGCCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGC 34680 Query 66557 TCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAAC 66616 || || ||| |||| ||| || || || | || | || |||||| || |||| | Sbjct 34681 TCGGGTAAGACAACCCTGGCGCTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATC 34740 Query 66617 GCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTG 66676 ||||| | ||||||| || || | |||||||| | || ||| ||| || ||| Sbjct 34741 TGCGCCTTCGTCGACGCGGAACATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTG 34800 Query 66677 GACCTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTT 66736 || || || || || || | ||||||||||| ||||||||||| ||||||||| Sbjct 34801 GATCTGGAGAATCTGCTGATCTCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACC 34860 Query 66737 GACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTC--GTCGTTGACTCCGTGGCGGCCC 66794 ||| || || || | | || || || || || || || ||||| || || Sbjct 34861 GACACGCTGGTGCGTTCCG--GTGCGATCGATGTTCTGGTGGTCGATTCCGTTGCCGCTT 34918 Query 66795 TGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGC 66854 || ||||| || || |||||||||| || || || || | ||||||||| || | Sbjct 34919 TGACCCCGCGTGCGGAAATCGAAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCC 34978 Query 66855 GCCTCATGTCACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGA 66914 |||| ||| ||||| |||||||||| || | |||| ||| | ||||| || Sbjct 34979 GCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGG 35038 Query 66915 CGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGA 66974 | | |||||||| | ||| ||||||||| |||| | ||| || ||| | Sbjct 35039 TCATTTTCATCAACCAGATCCGCATGAAGATCGG---CGTGATGTTCGGTTCGCCTGAAA 35095 Query 66975 CCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCA 67034 |||| |||||||| || || ||| ||||| || || || ||| | ||| |||| |||| Sbjct 35096 CCACGACGGGCGGCAATGCGCTGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCA 35155 Query 67035 TCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCA 67094 ||| | ||||||| | || |||| |||||||||| ||||| || ||||| |||| Sbjct 35156 TCGGTGCGCTGAAGGAACGTGACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCA 35215 Query 67095 AGAACAAGCTGGCCCCGCC 67113 |||||||||| || || || Sbjct 35216 AGAACAAGCTTGCGCCCCC 35234 >seq6252 Length=969 Score = 125 bits (138), Expect = 3e-24 Identities = 191/271 (70%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 66996 TGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 67055 ||| ||||||||| || |||||| |||| ||||||| | | | | | ||||||||| | Sbjct 959 TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTG 900 Query 67056 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGC 67115 | |||| ||| || | | ||||| || || ||||| ||||||||| ||||||||||| Sbjct 899 ACGAGGTTGTTGGTAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGT 840 Query 67116 ACCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCC 67175 ||| | ||||||||| | | ||||| |||| |||| | | | ||| | Sbjct 839 TCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGA 780 Query 67176 TCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT---TCAAGTACG 67232 ||||||||| |||| ||| || | || |||| || || ||||||| | | ||| Sbjct 779 TCGACCTGGGCGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACG 720 Query 67233 GGGACAAGAACGTCGCCCAGGGCAAGCCCAA 67263 | ||||| ||| |||||||||| |||| Sbjct 719 GCAGCAAGA---TCGGCCAGGGCAAGGCCAA 692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242837790001716