Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq2 156 1e-33 >seq2 Length=124989 Score = 156 bits (172), Expect = 1e-33 Identities = 460/699 (66%), Gaps = 15/699 (2%) Strand=Plus/Minus Query 40822 TGGTGATTATAATACATTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCG-T 40880 |||| |||||||| |||||||||||| ||||| || | || | || | | | Sbjct 54962 TGGTAGTTATAATAGTGTAACCACTCATCCAAATCTCTCTGCAGC-TCTTCTAAGCTGGT 54904 Query 40881 ATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCG 40940 ||| |||||||| || | || | ||||| ||| | |||||||||||||| || Sbjct 54903 ATAGATTTTCTTTCTCATAGCTGAGTCATAAAACTCTGCTTTCATTGTTTTATGGAAACG 54844 Query 40941 TTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATT 41000 || || |||||||| || || ||| | |||| || |||||| || || | | Sbjct 54843 CTCACATATACCATTGGTTTGTGGAGAGTAAGCTTTAGTCACCGTATGTTCAATACCCTC 54784 Query 41001 TATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCG 41060 || |||||||||||||||| || ||||||||||| || ||||| |||||| Sbjct 54783 TACACTTAAATAAAGCTCATAAGAATGGTTTTCTACCTTTCCCTTGAATTCAGTTCCTCT 54724 Query 41061 GTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTT--TCAAAGTATGGTAACACTTTA 41118 ||||| | ||| | ||| || |||| |||| ||| || | | || || ||| | Sbjct 54723 ATCAGTAAGTATCCTTAAGATAGGTATCCCTT--CTTGAGCATAAAAAGGAAAGACTCGA 54666 Query 41119 TCA-TTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGC 41177 ||| || || || || | | | ||||| || ||| ||||| | || || || Sbjct 54665 TCATTTAAGTATCTCTGGGGAGGTAATAGCTGTTTTCTGGGTATATAACTTAGCTTCTGC 54606 Query 41178 CACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTT 41237 ||| | | |||| ||| ||| | ||||| ||| | | | |||||| | | | Sbjct 54605 CACCCTCGTATAAGAATCTATATAAGTTTGACCATATACTTTTTCTATTCCTTTAAAGGT 54546 Query 41238 GCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACC 41297 || |||||| |||| ||||| | || | |||||| || || || | ||| ||||| || Sbjct 54545 ACCTACATAGTAAGTGTCTTGACATCCTAAATAGCCTGGATGGACTGATTCTATTTCTCC 54486 Query 41298 ACAGGCAATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTAT 41357 | ||| ||| | ||||||| | |||||||||| || ||| |||| | | | Sbjct 54485 ATGGGCTTCCTCTTTGGCTTTCTTGCTTTCTAAGGCTTTTAGCTGATTTTCTGTTA-CAC 54427 Query 41358 AATACCTTGTTCTGCAACCAGTTT---TTCCAGGGCGATTAATCTTTGCTTAAAATTGGC 41414 ||||| | || | ||| ||| ||| | ||| |||| | || ||| | |||| Sbjct 54426 CATACCATCTTGGG---CCATTTTAACTTCTAAGGCATTTAAACGTT-CTTGATATTGTT 54371 Query 41415 AAGATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTT 41474 | || || | || ||| | || | ||||||||| | ||| || ||||| |||||| | Sbjct 54370 TAAATCATTTCTTAGCCATACTGATCTTACACCTCCAGGTGATACCAAGATACCTTGTCT 54311 Query 41475 ACGGAGTTCGTTACTCACTCTTACCTGTCCAAATGCCGG 41513 ||||||||| || ||| |||||| | || || Sbjct 54310 TTTAAGTTCGTTAGATACCCTTCATTGTCCATACGCTGG 54272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166707808739388