Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq385 111 5e-20 seq3888 100 9e-17 >seq385 Length=624889 Score = 111 bits (122), Expect = 5e-20 Identities = 259/386 (67%), Gaps = 26/386 (7%) Strand=Plus/Plus Query 38571 TCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGA 38630 ||||||| |||||||| || || || || ||||| | || || || || |||| || Sbjct 406387 TCTTCTTACCCATGGCACGGCGCAGCAGATCGGCTTCGCCCAGCGTATAGCCGGACATTT 406446 Query 38631 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGA-GCCCGAAGGTCGGGTCCAGG 38689 |||||| || | |||||| |||||||||||||||| |||| | || | | Sbjct 406447 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGACGCCC-----TGGGTTTC--- 406498 Query 38690 ATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGCCCGTTC 38749 || | | || | || | || ||| ||||||| || ||||||| | || ||| Sbjct 406499 --CTTGACGAGATGGTCG---ATCTTGGGATGGATCGACGCCATCTCCTCGTCGCCATTC 406553 Query 38750 TTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCC 38809 ||||| |||| || || || | | |||||||||||||||||||||||||| Sbjct 406554 TTGCGC---GCGTTGTAGGT---CGGGATGTTTTCCATCGGACCCGGACGGTACAGCGCC 406607 Query 38810 ACGACGGCGGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGGAGCAGGG---AGCGC 38866 || | ||| ||||||||||| | |||| ||||| || || || ||| | |||| Sbjct 406608 ACAAGCGCGATGATGTCCTCGATCCGGTCGGGCTT---CATGCCGATCAGCGCCTTGCGC 406664 Query 38867 ATCGCGCCGCCGTCGAGCTGGAACACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAC 38926 || || | || | ||||||||| || ||| ||||| | | ||||| || || Sbjct 406665 ATGCCGGTACTTTCCACCTGGAACACGCCGACCGTCTCGCCGCGCGACAGCATTTCATAG 406724 Query 38927 GTCGCGGGGTCATCCAGCGGGATGTT 38952 | |||||||||||| | ||| Sbjct 406725 CTGAGCTTGTCATCCAGCGGCAGGTT 406750 >seq3888 Length=2482 Score = 100 bits (110), Expect = 9e-17 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||||| ||| | ||||||||| || || || || ||||| ||||| || ||||| | Sbjct 1268 GAAGTCGACGTCGAAGTCGGGCATCGATACCCGTTCCGGGTTAAGGAAACGTTCGAACAG 1327 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 || | | | ||||| |||||||||||| | | || || ||||||| || Sbjct 1328 CAGGTCATATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACATAGGCCACCAGCGACCC 1387 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || | || ||||| || ||||| || ||| ||||| || ||||| ||| || Sbjct 1388 GGCACCCGATCCACGGCCTGGGCCCACTGGCACGCCGTTGCTTTTGGCCCACTGGATAAA 1447 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39751 ||| |||| |||||||| ||||||||||||||| | || || || | |||| Sbjct 1448 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 1505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160225207244100