Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq3178 302 1e-77 seq1335 208 2e-49 >seq3178 Length=10189 Score = 302 bits (334), Expect = 1e-77 Identities = 636/935 (68%), Gaps = 45/935 (5%) Strand=Plus/Plus Query 30443 ATGGCCCTTTCTGATATGAAGGTATTCAACCAATACCTCAAAGCTGCAACTATCGAGACG 30502 ||| |||| || | ||| |||| |||||| ||||| ||| | || ||| |||||||| Sbjct 6795 ATGTCCCTGTCGCAAATGCAGGTTTTCAACGAATACATCATGCCAGCGACTCTCGAGACG 6854 Query 30503 CTGAACCAGGATGTCGAGAAGTTCAACGCCGCCTCGGCCG--GCGCCATCCGCCTGACCA 30560 ||| | ||| || ||| ||||||||||| |||| |||| ||| ||| | Sbjct 6855 CTGGATCAGTATCTCGCCGCTTTCAACGCCGCAA--GCCGTGGCGCAATCGTGCTGTCTC 6912 Query 30561 CGCAGGGCATCGACGGCGACTTCCTGCAAGAATCCTTCTGGGCTGGCCTGCATGGC---- 30616 | | ||| || || |||||||| ||||| || |||| | | ||| |||| Sbjct 6913 CTGACGGCTTCACTGGTGACTTCCTCCAAGAGTCGTTCTTC-CAGACCT---TGGCCGCT 6968 Query 30617 GCCCAGCGTCGTGTCGATCGCTACGCCGCCAACGGCGCCCAGTCG--GCAACCGCGCTCT 30674 |||||||| || || ||||||||| | | |||| ||| |||| ||||||| || Sbjct 6969 GCCCAGCGCCGCGTGGATCGCTACAGCACGAACGCCGCT--GTCGCTGCAACCGATCTGA 7026 Query 30675 CCCAGAAGCAG--TACGACGCTGTCAAGGTGGCCGGTGGCTTTGGTCCGATCCTGTGGGA 30732 | || | || ||| || || ||||| ||||||||||| |||||||||| | || Sbjct 7027 CTGAGCTGAAGAATACTTCGGTG--AAGGTCGCCGGTGGCTTCGGTCCGATCCGCTACGA 7084 Query 30733 GCCCTCGCAGCTCTCCTGGATTCAGAAG--AGCCCGGAAGAGGCGCTGGAAGTCATCAGC 30790 ||| |||||| | | ||| | || | || | | |||| | |||||| ||| Sbjct 7085 GCCATCGCAGATGACTTGGCTGGAGCGTCCAACCGCGCA-AGGCA-TCGAAGTCGCCAGT 7142 Query 30791 CGCAACCTGTCCGAGGCAATCGTGGCG---GATCAGCTGAACACCGTAATCGCCGCCCTG 30847 ||| || || | |||| || | || ||||||||||| | |||||||||||| Sbjct 7143 CGCGC---GTTCGCTGAAATCCTGCTGAAGGACCAGCTGAACACAGCGATCGCCGCCCTG 7199 Query 30848 GTCGCTGCTATCAGCAACCAGGCCGCAGCGACCAACGACGTGTCGGCTACTGCCGGTGTT 30907 || || || |||| | ||||||||| ||| |||||| ||||||||||| || || | Sbjct 7200 GTTGCCGCGATCACCGCCCAGGCCGCCGCGGTCAACGATGTGTCGGCTACCGCTGGCATC 7259 Query 30908 ACCTATGCCGCCATCAACGCCGCGCACGCCAAGTTCGGCGACGCCTCCGGCCGCCTGGTT 30967 ||||| || | | | ||| ||| ||||| |||||||||||||| | |||||| Sbjct 7260 ACCTACGCTGGCCTGAACAACGCACACGCGAAGTTCGGCGACGCAAGCCAGAACCTGGTC 7319 Query 30968 GCGCAGGTAATGAACGGCGTGACCTTCCACGACCTCATCGGGAAGAACCTCACCAACGCG 31027 | ||||| ||| | ||| || || ||| | | | || ||||||| | ||| | Sbjct 7320 ACCCAGGTGATGCAGGGCACGAGCTATCACAAGTTGGTTGGCCAGAACCTGGCGAACCAG 7379 Query 31028 CAGCAGCTGTTCCGTGCTGGCGACGTGACGATCGTCGATATCCTCGGCAAAGCCGTCATC 31087 ||||||||||||| || ||| |||| | || || || |||||||| | | | Sbjct 7380 CAGCAGCTGTTCCAGGCCGGCAACGTCCGCGTGGTGGACATTCTCGGCAAGATCTCCGTT 7439 Query 31088 GTGACCGACTCCCCGGCGCTGTACTCGGCCGCGGTCGCCACTCCGGCTGCACCTGCCAAG 31147 ||||| || ||||||||||| | | | | || ||| ||| |||| Sbjct 7440 GTGACGGATGCCCCGGCGCTG-ATGCAGAC-----CGGCACCCCG---------AACAAG 7484 Query 31148 CAGCGCGTGCTGTCCCTGGCCGACGGCGCTGGCATGGTGATGGACGGTTCCGACCTGATC 31207 | | | |||||||||| | ||||||| | || ||||| |||| | ||| Sbjct 7485 GAAATCATCCTGTCCCTGGTGCAAGGCGCTGCGCTCGTTCACGACGGCCGCGACATCATC 7544 Query 31208 ACCAATATCGAGACCAGCAACGGTAAGGGCCGCATCGAGACGACCTTCCAGGCCGACTAT 31267 | ||| || |||| |||||| |||| || ||||| || || | || ||||||| Sbjct 7545 AGCAACGTCCAGACTGTCAACGGCAAGGAGCGTATCGAAACCACGCTGCAAACCGACTAC 7604 Query 31268 TCCTTCGGTCTGGCGTTGCGCGGCTATACCTGGGACACCGCCAACGGTGGCAAGTCTCCG 31327 |||||||| ||| || ||||| |||||||||||| ||| ||| |||||||| || Sbjct 7605 ACCTTCGGTTTGGGCCTGAAGGGCTACACCTGGGACACCACCACCGGCGGCAAGTCGCCT 7664 Query 31328 ACCGACGCCGAGCTGGCCACCGGTTCCAACTGGGA 31362 ||||||||||| ||||| |||||| |||||||||| Sbjct 7665 ACCGACGCCGAACTGGCGACCGGTACCAACTGGGA 7699 >seq1335 Length=14169 Score = 208 bits (230), Expect = 2e-49 Identities = 313/446 (70%), Gaps = 33/446 (7%) Strand=Plus/Minus Query 6112 TTCTCGACGATCCGTTGCGCTTCGTCTTCGTCAAAGATGCCGGTGTAGCCAAAGGCGAGT 6171 || ||||| || || | ||||| || | |||| |||| || | | || ||||| || Sbjct 8295 TTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGA 8236 Query 6172 CGGGCGCACTGGATCATGGCTTTGTGGCGCAGCATCCGCTTCGGATGGCTCTGCCAGGG- 6230 ||||| ||||| ||||||||||| || || | |||||| || ||||| |||||| || Sbjct 8235 CGGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGT 8176 Query 6231 ----------------CT----GGGTGTTGC--GCTT-------GCACTCGGCCATCCAT 6261 || |||| ||| | || ||| || ||||||| Sbjct 8175 CCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCAC 8116 Query 6262 TCGGTGACCTTGATTGGGTGATTGCGGTCCTTGCGATAGATGATGCAGGTGCATGACTCG 6321 ||||| || ||| || ||||||||||||||||| || || ||| ||||| || || Sbjct 8115 TCGGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAATCCGGCATGTGCAGGATTCA 8056 Query 6322 TCGTCCTGCTGGAAGTCCATCCCATCGAACGCGCCATTTTCATTAATGATCCGCGACCAT 6381 | |||||||| |||||||| ||||| ||| |||||||| ||||| || ||||| Sbjct 8055 TTGTCCTGCTCAAAGTCCATACCATCAAACTGCTGGTTTTCATTGATGATGCGGGACCAG 7996 Query 6382 CCGTCCACGCCTACGACCGGCACGATGCC--TC-CCTTATCCGGGAAGGCATAGATCTCC 6438 || || ||||| || ||||| |||||||| || |||||| |||||||| || || || Sbjct 7995 CCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCT 7936 Query 6439 TTCGTCCAGGGGTTCAGGCCGTACTGGTCAGCGACGATCAGGAGCGCCTGCATCTGCGCG 6498 |||||||| || || ||||||||||||| ||||||||||| | || | |||||| Sbjct 7935 TTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCGATGAACTGCGCA 7876 Query 6499 TCGCTGACTTGGCCCTTGAAGGCTGT 6524 |||||| | | ||| || || || || Sbjct 7875 TCGCTGGCATCGCCTTTAAATGCCGT 7850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155595234705264