Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq1335 2520 0.0 seq6381 324 5e-84 seq3699 203 1e-47 >seq1335 Length=14169 Score = 2520 bits (2794), Expect = 0.0 Identities = 1604/1742 (92%), Gaps = 0/1742 (0%) Strand=Plus/Minus Query 1778 ATCGCCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGA 1837 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 9214 ATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGA 9155 Query 1838 TGAACTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGA 1897 ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 9154 TGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGA 9095 Query 1898 CATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATCTT 1957 ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 9094 CATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTT 9035 Query 1958 TTCGAGTCACCCACATGCTGAATTGCACCTGGGCCATGTAAGCTGATTTTATGGCCTCGA 2017 |||| ||||||||||||||| | |||||||||||||||||||| || ||||||||||||| Sbjct 9034 TTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGA 8975 Query 2018 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGACATTTCAGCTCAAGGC 2077 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 8974 AACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGC 8915 Query 2078 CGTTGCCGTCACTGCATAATCCATCCGGAGAGCAGGCGGTACGCATACTTTCGTCGCGAT 2137 ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| Sbjct 8914 CGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGAT 8855 Query 2138 AGATGATCGGGGATTCAGTAATATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGT 2197 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 8854 AGATGATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGT 8795 Query 2198 CGTTCTCGTACTGTTTTCCCCATGCCAGGGCTTTGGCGTTAACTTCCGGGGCCACACCCG 2257 |||||||||||||||||||||| ||||| || || || ||||||||||| |||||||| | Sbjct 8794 CGTTCTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGG 8735 Query 2258 TGCAGACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCTTTC 2317 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 8734 TGCAAACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTC 8675 Query 2318 CGGAGCGGGGTTTGGCTATCACGTTGTGAACTTCTGAAGCTGTGATGACCCCGAGCCGTA 2377 | |||||||| || |||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 8674 CTGAGCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTA 8615 Query 2378 ATTTTTGCCATGCATAATCTCCCTGCTCGACACCTCTCACGTCGATCCCGGTACGTTGTA 2437 |||| |||||||||| ||| ||||| |||||| |||||||||||||||||||||| || | Sbjct 8614 ATTTGTGCCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCTGCA 8555 Query 2438 GGATAATTTCTGGTGTCATGCTGCCACCTTCTGCTCCGTGGCTTTCTGTTTCAGGAATCC 2497 ||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 8554 GGATAATGTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAGGAATCC 8495 Query 2498 AAGAACCTTCTCTGCTTCGGCCTGGGACAGTTCTGACGACGCCCGAATGTAGCGGCGAAA 2557 |||| | ||| ||||||||||||| | |||||||||||| || ||||||| ||||||||| Sbjct 8494 AAGAGCTTTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCGAAA 8435 Query 2558 TATCTGAGAACAGAGCGGCAAGAGGTCGTCATCCCACGTTTTTTCCATGGAAGTAAGAAG 2617 |||||| |||||||||||||| | |||||||||||| ||||| |||| || | || || Sbjct 8434 TATCTGGGAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAGCAG 8375 Query 2618 GGCGTTAATTTCCGACATGGTCTCTTCGTTAACCGGGGTGATGTCGCGTTCCGGCTGACG 2677 | |||||| ||| |||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 8374 AGTGTTAATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTGACG 8315 Query 2678 TTCTGTAGTATATGCGGTATTTTCGACAATGCGTTCGGCTTCATCCTTGTCATAGATACC 2737 ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 8314 TTCTGCAGTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACC 8255 Query 2738 AGCAAATCCGAAGGCCAGACGGGCACACTGAATCATCGCTTTATGCCGTAACATCCGTTT 2797 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 8254 AGCAAATCCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTT 8195 Query 2798 GGGATGCGACTGCCACGGCCCCGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTGCGCG 2857 |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| Sbjct 8194 GGGATGCGACTGCCACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCG 8135 Query 2858 GCGACATTCATCCATCCACTCGGTAACGCAGATCGGGTGATTACGGTCTTTGCGGTAAAT 2917 ||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 8134 GCGGCATTCATCCATCCACTCGGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAAT 8075 Query 2918 CCGACATGTACAGGATTCATCGTCCTGCTCAAAGTCCATGCCATCAAACTGCTGGTTTTC 2977 ||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 8074 CCGGCATGTGCAGGATTCATTGTCCTGCTCAAAGTCCATACCATCAAACTGCTGGTTTTC 8015 Query 2978 GTTGATAATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATC 3037 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8014 ATTGATGATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATC 7955 Query 3038 AGGGAAGGCGTAAATTTCTTTCGTCCATGGATTAAGGCCGTACTGGTTGGCAACGATCAG 3097 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 7954 AGGGAAGGCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAG 7895 Query 3098 CAATGCGATGAACTGCGCATCGCTGGCATCACCTTTAAATGCAGTCTGGCGAAGAGTGGT 3157 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 7894 CAATGCGATGAACTGCGCATCGCTGGCATCGCCTTTAAATGCCGTCTGGCGAAGAGTGGT 7835 Query 3158 GATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCTGCCAG 3217 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 7834 GATCAGTTCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCAGCCAG 7775 Query 3218 CGTTGCGAGAGCTGTACTCATCTGGTTTATACCTCTGAATCAATATAAATCTGGTGGCGG 3277 ||||||||| |||||||||||| | ||||||||||||||||||||| || ||| ||| | Sbjct 7774 CGTTGCGAGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAACCTGATGGTGA 7715 Query 3278 GCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGTTCCTGAAAATCGACATCG 3337 ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| Sbjct 7714 GCAATGGTTTCAACCATGTACCGGATGTGTTCTGCCATGCGCTCCTGAAACTCAACATCG 7655 Query 3338 TCATCAAATGCACGGGCAATGGCTTTTTTGCTGGCTCCATGACGTTGCAGATTATCGATG 3397 |||||||||||||||| |||||||||||||||||| || ||||| | || ||||||| Sbjct 7654 TCATCAAATGCACGGGTAATGGCTTTTTTGCTGGCCCCGCAGCGTTGTAAATGATCGATG 7595 Query 3398 CACAGCGATTCAAACAGGTGCTGGGGCAGACCTTTTTCCAGGTCGTCCGCCAGTTCAGTC 3457 || ||||||||||||| ||||||||||| ||||| |||| |||||| |||||||| | | Sbjct 7594 CAGAGCGATTCAAACAAATGCTGGGGCAGGCCTTTGTCCATGTCGTCTGCCAGTTCTGCC 7535 Query 3458 TCATTTTCTTCACGGGCAATTTGCCGGTAGTGTCGTGCCCATGACTGCTCTTCAATGCGA 3517 || || ||||||||||| || ||| ||||||| || ||||| ||| | |||| ||| Sbjct 7534 TCTTTCTCTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGCCTCAAGACGA 7475 Query 3518 TC 3519 || Sbjct 7474 TC 7473 Score = 145 bits (160), Expect = 3e-30 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 58991 GCTCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAA 59050 ||||||||| |||||||||||| ||||||| || | ||| |||||||||||||| ||| Sbjct 10173 GCTCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCTTGCTGGCAACTGGCACAA 10114 Query 59051 GTTCGGCATCCGCGAACAGCCTGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAA 59110 || || || || |||| ||| | |||| || ||||||||||||||||||||||| ||| Sbjct 10113 GTCCGACAACCCTGAACGGCCAGTCGTCTTCGTTCATCTATCGGATCGCCACACTCACAA 10054 Query 59111 CAATGAGTAGCAGAT 59125 |||||||| |||||| Sbjct 10053 CAATGAGTGGCAGAT 10039 >seq6381 Length=773 Score = 324 bits (358), Expect = 5e-84 Identities = 240/279 (86%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 27582 ACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGTGCCGCCACAAATTTTGGCT 27641 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1 ACGAATGTTTGCTGGGTTTCTGTTTTAACAACATTTTCTGCGCCGCCACAAATTTTGGCT 60 Query 27642 GCATCGACAGTTTTCTTCTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCC 27701 ||||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct 61 GCATCAACAGTTTTCTCCTGTCCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTCC 120 Query 27702 TTTGGTGCTACTGCTGTCTGTTTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGTA 27761 ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 121 TTTGGTGTTACTGCTGTCGGTTTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGTA 180 Query 27762 ATAAGCAGGGCCAGCGCAGTAGCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC-T 27820 ||||||| ||||| || | || | | |||||||||||| | |||| | ||| | Sbjct 181 ATAAGCATTGCCAGAGCGGCAGAAAACAACATTTTTTTCATCTTATTATCC----TGCAT 236 Query 27821 TTTTGAAGTTCGCAGAATCGTATGTGTAGAAAATTAAAC 27859 | || || |||||||| |||||| | |||||||| Sbjct 237 TGTTAAAAACGGCAGAATCCTATGTGACAACAATTAAAC 275 Score = 140 bits (154), Expect = 1e-28 Identities = 144/182 (79%), Gaps = 5/182 (3%) Strand=Plus/Plus Query 27915 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCTGACGGGGAAC 27974 || |||| || |||||| ||||||||| |||||| ||| || |||| ||||||||| Sbjct 404 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAAT 463 Query 27975 TTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTT 28033 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 464 TCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGC 522 Query 28034 TCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACC 28093 | || ||| | || | || ||| | || ||| | ||||||||| |||||||||||||| Sbjct 523 TGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACC 579 Query 28094 GG 28095 || Sbjct 580 GG 581 >seq3699 Length=658 Score = 203 bits (224), Expect = 1e-47 Identities = 169/206 (82%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 27076 GGGCTG--AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAG 27133 |||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||| | Sbjct 435 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 494 Query 27134 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATG 27193 ||| || ||| ||||||| || || | |||||||| |||||| |||||||||||||| Sbjct 495 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATG 554 Query 27194 TTGCTGCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAA 27253 |||||||||| |||| | |||| ||| ||| ||||| |||||| |||||||||||| Sbjct 555 TTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATG 614 Query 27254 CTCTTCGCGCTGACGTTGCCGCTGGT 27279 |||| || | || |||||||||||| Sbjct 615 CTCTGCGTGATGGTGTTGCCGCTGGT 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194660428020156