Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq540 89.7 4e-13 seq322 87.8 1e-12 >seq540 Length=89862 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 |||||||||||||||||| || ||| | || || ||| ||| ||| | || || ||| | Sbjct 83627 TAAAATGCAAATTTTTGTAAAGACTTTAACCGGAAAAACTATCACATTAGAAGTTGAAGG 83686 Query 27846 CACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | ||| || | ||| ||||| ||||| || ||||||||| | || Sbjct 83687 TTCTGACACCATTGAAAAT--GTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCC 83744 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||| | |||| |||||||| ||||||||||| || | || | | | || ||| Sbjct 83745 GACCAACAAAGACTAATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGAT 83804 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 || ||||||||||| || || | |||||||| Sbjct 83805 TATAACATCCAAAAGGAATCAACCCTCCATTTGGT 83839 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | || || ||| || ||| | || || ||| | | Sbjct 84315 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 84374 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| || ||||||||| | || || | Sbjct 84375 GACACCATTGAAAAT--GTCAAGACCAAAATCCAAGATAAAGAAGGTATCCCACCCGATC 84432 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | | ||||||||||| ||||||||||| || | || | | | || ||||||| Sbjct 84433 AACAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACA 84492 Query 27968 ACATCCAAAAAGA 27980 ||||||||||||| Sbjct 84493 ACATCCAAAAAGA 84505 >seq322 Length=112280 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || || | || || ||| |||||| | || || ||| | | Sbjct 11233 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11292 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | || || | |||| |||| | |||||||||||| | || || | Sbjct 11293 GACACCATCGAAAA-CGTTAAAACCAAAA-TCCAAGACAAAGAAGGTATCCCACCCGATC 11350 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | | |||||||| || ||||||||||| || | || | || ||||| |||| Sbjct 11351 AACAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACA 11410 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||||| ||| | ||||| || Sbjct 11411 ACATCCAAAAAGAATCAACTCTCCATTTAGT 11441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355828683594498