Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq982 152 1e-31 seq540 152 1e-31 seq322 147 5e-30 seq391 118 2e-21 seq370 93.3 1e-13 >seq982 Length=41121 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| | || ||||| || |||||||||||||| ||||| | ||||| | Sbjct 1920 AAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACG 1979 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||| || || || ||||| ||||| | |||||| || || || | ||||| Sbjct 1980 ACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTC 2039 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| |||||||| || |||||||| |||||||| || | ||| ||||| | || Sbjct 2040 TTTGTCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACCTCTAAGGT 2099 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || | ||||| ||||| | ||||| Sbjct 2100 GATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2138 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| | || ||||| || |||||||||||||| || || | | || | Sbjct 2604 AAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACG 2663 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||| | || || || ||||| ||||| | |||||| ||||| || | ||||| Sbjct 2664 ACCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACCTTC 2723 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| || ||||| || || ||||| ||||||||||| | |||||| || | || Sbjct 2724 TTTGTCTTGAATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAGGT 2783 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || || || | ||||||||||| | ||||| || Sbjct 2784 GATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCATGTT 2825 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | || || || || || ||||||||||| || || | | || | || Sbjct 2151 TCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGATAAAGTACGACC 2210 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| || || || || |||||||| | ||||||||| || || | ||||| || Sbjct 2211 ATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTT 2270 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || |||||||||||||||||||| | ||| || || | ||||| Sbjct 2271 GTCTTGGATCTTGGTCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCCAAGGTGAT 2330 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | ||||||||||| | ||||| Sbjct 2331 TGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 2366 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| || || | || || || || || ||||| ||||| || || | | || Sbjct 2373 ACGGAGTCTAAGTACCAAATGGAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAAAGT 2432 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || ||||| ||||| | |||||| || || || | || Sbjct 2433 ACGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACC 2492 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| |||||||| || || ||||| ||||||||||| | |||||| || | Sbjct 2493 TTCTTTGTCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAA 2552 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | ||||| ||||| | ||||| Sbjct 2553 GGTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 2594 >seq540 Length=89862 Score = 152 bits (168), Expect = 1e-31 Identities = 168/221 (76%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | || || || || || ||||||||||||||||| | ||||| | || Sbjct 83846 TCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGACC 83787 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| || || || || ||||| || | ||||||||| || || | ||||| || Sbjct 83786 ATCTTCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGGATACCTTCTTT 83727 Query 211019 GTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGA 211077 || ||||| ||| || || || ||||| ||||||||||| | |||||| || | |||| Sbjct 83726 ATCTTGGAT-TTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGA 83668 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 | || ||||| || | |||||||||||| | ||||||||| Sbjct 83667 TAGTTTTTCCGGTTAAAGTCTTTACAAAAATTTGCATTTTA 83627 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| | ||||| || || |||||||||||||||||||| | ||||| | Sbjct 84077 AAGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAGAGGGTACG 84018 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||| || || || || || ||||| | |||||| || || || | ||||| Sbjct 84017 ACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTC 83958 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 || || |||||||| || |||||||| ||||||||||||| ||||| || | || Sbjct 83957 TTTATCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAACTTCTAATGT 83898 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || | || || ||||| | ||||| Sbjct 83897 GATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 83859 Score = 145 bits (160), Expect = 2e-29 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | || ||||| || || ||||||||||||||||| | ||||| | Sbjct 84304 AGTCTGAGAACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGG 84245 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| || || || || |||||||| | ||||||||| || || | ||||| Sbjct 84244 CCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCT 84185 Query 211017 TTGTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 || || ||||| ||| || || || ||||| ||||||||||| | |||||| || | || Sbjct 84184 TTATCTTGGAT-TTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGT 84126 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || | ||||| ||||| | ||||| Sbjct 84125 GATAGTTTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 Score = 127 bits (140), Expect = 5e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || || || || || || |||||||||||||| ||||| | ||||| | || Sbjct 84530 TCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACC 84471 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| || || || || || ||||| | |||||| || || || | ||||| || Sbjct 84470 ATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTT 84411 Query 211019 GTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGA 211077 || ||||| ||| || || || ||||| ||||||||||| | |||||| || | |||| Sbjct 84410 ATCTTGGAT-TTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGA 84352 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || || || | || || ||||| | ||||| Sbjct 84351 TGGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 >seq322 Length=112280 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| | || ||||| || |||||||||||||| || || | ||||| | Sbjct 12135 AAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACG 12076 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||| ||||| || || || ||||| | |||||| || || || | ||||| Sbjct 12075 ACCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTC 12016 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| || |||||||| || || ||||| ||||||||||||| |||||| || | || Sbjct 12015 CTTATCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTCAACTTCTAAGGT 11956 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || | ||||| ||||| | ||||| Sbjct 11955 AATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11917 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| ||||| | || ||||| || |||||||||||||| || || | | || Sbjct 11454 ACGGAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGT 11395 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || || || ||||| | |||||| || || || | || Sbjct 11394 ACGACCATCTTCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACC 11335 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||| || ||| |||||||||||||||||||| | |||||| || | Sbjct 11334 TTCTTTGTCTTGGATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAA 11275 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | ||||| ||||| | ||||| Sbjct 11274 GGTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 Score = 123 bits (136), Expect = 6e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || || |||||||||||||| || || | || || | |||||||| | || Sbjct 11207 TGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATCTTCTAATTGT 11148 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || ||||| | ||||||||| || || | ||||| ||||| ||||| ||| Sbjct 11147 TTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTCTTGGAT-TTT 11089 Query 211032 TGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || ||||| ||||| ||||| | |||||| || | || || || || || || Sbjct 11088 GGTCTTGACATTTTCAATGGTATCAGAACCTTCAACTTCTAAGGTAATAGTTTTACCGGT 11029 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | ||||||||||| | |||||| Sbjct 11028 CAAGGTCTTTACAAAGATTTGCATT 11004 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| || || | || ||||| || |||||||||||||| || || | ||||| | Sbjct 11679 AAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTACG 11620 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || ||||| | || || || || || || || | ||||||||| || || | ||||| Sbjct 11619 ACCGTCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTGGGATACCTTC 11560 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| |||||||| || || || || ||||| ||||| | |||||| || | || Sbjct 11559 TTTGTCTTGGATCTTGGTCTTTACATTCTCAATGGTATCAGAACCTTCAACTTCTAAGGT 11500 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || | ||||||||||| | ||||| Sbjct 11499 AATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11461 Score = 114 bits (126), Expect = 3e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | || || || || |||||||||||||| || || | || || | || Sbjct 11904 TCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACC 11845 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || || || || | |||||| || || || | ||||| || Sbjct 11844 ATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTT 11785 Query 211019 GTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGA 211077 ||| ||||| ||| || || |||||||| ||||| ||||| | ||| || || | |||| Sbjct 11784 GTCTTGGAT-TTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTCTACTTCCAAGGTGA 11726 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || || || | ||||||||||| | ||||| Sbjct 11725 TTGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11689 >seq391 Length=66319 Score = 118 bits (130), Expect = 2e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| || || | || || || || || ||||||||||| ||||| | || Sbjct 37215 ACGGAGTCTGAGAACTAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCTTGTAAAGT 37274 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| | || || || || |||||||| | |||||| || || || | || Sbjct 37275 ACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACC 37334 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||| || || ||||||||||||||||| || | || || ||||| Sbjct 37335 TTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATCCCTCTACTTCGAG 37394 Query 211073 AGTGATCGTCTTTCC 211087 ||| |||||||| || Sbjct 37395 AGTAATCGTCTTACC 37409 >seq370 Length=30528 Score = 93.3 bits (102), Expect = 1e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 ||||||||||| ||||| |||||||| |||||||| || ||||||| | ||||| | Sbjct 9755 CTTCCAAAGAAACACGGTAGAGGAGGTCAATCTGCACTTCGTTTTGCTCGTCTTCGTTTG 9696 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926 ||||| | ||||| ||| | ||||| || | || || | || | | ||||| Sbjct 9695 GAAAAACGTCACAATTACGTCAGAAAGGTATCTGAATTGGCCACTCAATTCTATATCACC 9636 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGAC 139982 | | || |||||||||| | |||||||||||||| || || |||||||| Sbjct 9635 AATGATAAACCAAATGTTTCTGGTTTGGTTTTGGCAGGTTCTGCCGATTTCAAGAC 9580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159036543389510