Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq982 120 2e-22 seq322 114 9e-21 seq540 111 1e-19 seq391 91.5 1e-13 >seq982 Length=41121 Score = 120 bits (132), Expect = 2e-22 Identities = 161/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 23602 TTACTTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGT 23660 ||| ||||| ||||| ||||| || || ||| | || || ||||| ||||| | ||||| Sbjct 2832 TTAATTAAACATGCAAATTTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGT 2773 Query 23661 TGACTCCACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTAC 23719 ||| | ||||| |||||| | | || || || | || |||||||||||| | | Sbjct 2772 TGAAGGTTCTGACACCATTGAAAATGTCAAGACCAAGA-TTCAAGACAAAGAAGGTATCC 2714 Query 23720 CGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAG 23779 | || |||||||| | | || || ||||| |||||| | ||||| | || |||||| Sbjct 2713 CACCTGATCAACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTAT 2654 Query 23780 GCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| |||||||| |||||||| || || | |||||||| Sbjct 2653 CCGACTACAACATCCAAAAAGAATCAACTCTCCATTTAGT 2614 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || ||| | || || ||||| ||||| | |||||||| | Sbjct 2594 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTGGAAGTTGAAGGTTCT 2535 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | | || || || | | |||||||||||| | || || ||||| Sbjct 2534 GACACCATTGAAAATGTCAAGACCAAGA-TCCAAGACAAAGAAGGTATCCCACCCGATCA 2476 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || |||||| ||||||| | || |||||| ||| ||||| Sbjct 2475 ACAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAA 2416 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| || || || | ||||| || Sbjct 2415 CATTCAAAAGGAATCAACCCTCCATTTGGT 2386 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || ||||| ||||| | ||||| || | Sbjct 2366 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTCGAAGGTTCT 2307 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || |||||||||||| | || || || ||| Sbjct 2306 GACACCATCGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAA 2247 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||||||| |||||| ||||||| | || |||||| ||| |||||| Sbjct 2246 CAAAGACTTATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAAC 2187 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || | ||||| || | || || |||| || Sbjct 2186 ATCCAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGAGGTGG 2140 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || ||| | || || ||||| ||||| | || || || | Sbjct 2138 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCA 2079 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || |||||||||||| | || || |||||| Sbjct 2078 GACACCATTGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 2019 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || || || |||||| ||||||| | || || | ||||||||| Sbjct 2018 CAAAGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAAC 1959 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || |||||||| || || | |||||||| Sbjct 1958 ATCCAAAAAGAATCTACTCTCCATTTAGT 1930 >seq322 Length=112280 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || ||| | || || ||||| || || | |||||||| | Sbjct 11233 ATGCAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCT 11292 Query 23671 GACACTGTTGAAATA-TTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| ||||||| |||| | |||||||||||| | || || ||||| Sbjct 11293 GACACCATCGAAAACGTTAAAACCAAAA-TCCAAGACAAAGAAGGTATCCCACCCGATCA 11351 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || |||||| ||||||| | || |||||| ||| ||||| Sbjct 11352 ACAAAGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAA 11411 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| |||||||| || || | |||||||| Sbjct 11412 CATCCAAAAAGAATCAACTCTCCATTTAGT 11441 Score = 87.8 bits (96), Expect = 1e-12 Identities = 171/250 (68%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 23594 ACAATTAATTACTTAA-----AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGAT 23648 ||| |||||| |||| |||||| || || || || ||| | || || ||||| || Sbjct 10983 ACATTTAATTTTTTAATACATAATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACTAT 11042 Query 23649 CACTCTCGAAGTTGACTCCACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACA 23707 || | |||||||| | || || |||||| | | || || |||| | |||| Sbjct 11043 TACCTTAGAAGTTGAAGGTTCTGATACCATTGAAAATGTCAAGACCAAAA-TCCAAGACA 11101 Query 23708 AAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG 23767 |||||||| | || || || ||||| | | || ||||| || |||||| | ||||| | Sbjct 11102 AAGAAGGTATCCCACCCGACCAACAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATG 11161 Query 23768 AACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGT 23827 || ||| | || |||||||| |||||||| || || | |||||||| | | | Sbjct 11162 GTCGTACTCTCTCTGACTACAACATCCAAAAAGAATCTACCCTTCATTTAGTACTCCGTT 11221 Query 23828 TGCGAGGAGG 23837 | ||||||| Sbjct 11222 TAAGAGGAGG 11231 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || ||||| ||||| | ||||| || | Sbjct 11689 ATGCAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTAGAAGGTTCT 11748 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || ||||| |||||||||||| | || || |||||| Sbjct 11749 GATACCATTGAAAACGTCAAGACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAA 11808 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || |||||| | ||||| | || ||| | || |||||| Sbjct 11809 CAAAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 11868 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || ||| | ||||| || | || || |||| || Sbjct 11869 ATCCAAAAAGAATCAACACTCCATTTGGTACTTAGATTAAGAGGTGG 11915 >seq540 Length=89862 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| ||||||||| | || || ||||| ||||| | |||||||| | Sbjct 84315 ATGCAAATTTTTGTTAAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCT 84374 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | | || || |||| | || ||||||||| | || || ||||| Sbjct 84375 GACACCATTGAAAATGTCAAGACCAAAA-TCCAAGATAAAGAAGGTATCCCACCCGATCA 84433 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| |||||| ||||||| | || || | |||||||| Sbjct 84434 ACAAAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAA 84493 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || | ||| | ||| | || || |||| || Sbjct 84494 CATCCAAAAAGAATCAACCCTCCATCTCGTTCTTAGATTAAGAGGTGG 84541 >seq391 Length=66319 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 || || ||||| ||||||||||| || | ||||| | |||| | || ||| Sbjct 37409 GGTAAGACGATTACTCTCGAAGTAGAGGGATCAGACACCATCGAAAACGTCAAGGCTAAA 37350 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 || |||||||||||| | || || |||||||| | | || ||||| || |||||| Sbjct 37349 ATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAA 37290 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 | ||||| | || |||||| ||||||||||| ||||| || || || | |||||| Sbjct 37289 TTAGAAGATGGTCGTACTTTACAAGATTACAACATCCAAAAGGAATCAACCCTCCATTTA 37230 Query 23818 GTT 23820 ||| Sbjct 37229 GTT 37227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337977575069192