Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq54 315 6e-81 seq222 197 1e-45 seq3596 125 6e-24 >seq54 Length=99412 Score = 315 bits (348), Expect = 6e-81 Identities = 614/899 (68%), Gaps = 45/899 (5%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 |||||||||||| ||| || ||||| |||||||| ||||| |||| || || || | Sbjct 88915 TTTTTGGTATTCACCTACGCGTTTTTCAAAGAAATTGGTTTTCCCTTGTAGGGAGATCAT 88856 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||||| || || ||||| || ||||||| || |||| || | |||| Sbjct 88855 CTCCATAAAGTCGAATGGATTGGTCACGTTGTATACCTTAGAACACCCTAA---TTCAAG 88799 Query 4376 CAAT---CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAAT 4432 ||| || ||||| ||||| || || ||||| |||| | ||| || || ||||| Sbjct 88798 TAATAACCGATCAGCGACAAACTCGATGTACTGTTTCATCAAGTCGGCATTCATGCCAAT 88739 Query 4433 TAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 | | ||||||| || | || | ||| || ||||| || | ||| || || || || Sbjct 88738 GAGCTTAACAGGTAATGCATCAGTGACAAATTCCTGTTCAATTGCTACTGCATCGGTAAT 88679 Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCC---AAACAATAAACA 4549 || ||||||| | |||| | ||| |||| ||||| | |||||| || Sbjct 88678 AATTTCTTTTACCCTTTCTTGTGGAAGTTGATTTTTTAAGTGCTTGGTATACAATAGGCA 88619 Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCC 4609 ||||| ||||||||||| |||||||| || ||| |||||||| || || | | || Sbjct 88618 AGCAAAGTCACAATGCAATCCTTCGTCCCTAGAAATGAGTTCGTTGGAGAAGCTAAGACC 88559 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 ||||||||| || || ||||| ||||| || || | | ||| ||||| ||||| || Sbjct 88558 GGGCATTAATCCCCTTTTTTTGAGCCAGAAGATCGAGCAAAAGCTACCAGAGAAGAAAAT 88499 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAAT 4729 ||||||||| || ||||| || | | || | || || |||| |||| || Sbjct 88498 GCCTTCTACAGCTGCAAAGGCAATGAGTCTTTCAGCAAAA---CTCGCTTGGTCT---AT 88445 Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||| ||| ||||| | |||||||||||||| || | |||| || || || || Sbjct 88444 CCAACGTAAAGCCCATTCTGCTTTTTTCTTAACACAGTCGAGGGTGTCGATGGCATTGAA 88385 Query 4790 TA----ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 | |||| |||| || | || || | ||| || || || || || || ||| Sbjct 88384 AAGGCGATTT-CTTTCTTGA---GGATCCTTAATGTAGGTATCAATGAGGAGTGAATAGG 88329 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT-T 4904 |||| ||||| ||||| |||| ||||||||| || || |||||| || | || ||||| | Sbjct 88328 TTTCTGAATGGATATTCTCTACAGCAATCTGGAAGCCATAAAAGAATTTGGCCTCTGTAT 88269 Query 4905 ACTTGAACTTC-GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 ||| | ||||| | |||||| | ||||| |||| ||||| || || ||||||||||| || Sbjct 88268 ACT-GTACTTCAGCTACAAAGT-TTTCTGCTAAATTTTCATTAACAATACCGTCACTAGC 88211 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 |||||| || ||||| || ||||| ||||||| |||| || || ||| | Sbjct 88210 TGCAAAGAAAGCCAATACGTGAGAGATAAAGTGTCGTTCATC---------GTTATTCAA 88160 Query 5024 GTGGGGCAAATCTTT---------AGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074 | ||| | | ||||| | |||| |||| || ||| | |||||||| || Sbjct 88159 GCGGGCCCAGTCTTTGAGGTCTTGACTTAAGTCAATCTCCTCAGCGGTCCAAAAGCTAGC 88100 Query 5075 TTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATC 5133 ||| ||||| || || | ||| |||||| ||| | || || | || ||||||| Sbjct 88099 TTCTGCTTTCTTATAAAAGTTCCATATATCATGATGTTCGATAGGGAATAATACAAATC 88041 >seq222 Length=228455 Score = 197 bits (218), Expect = 1e-45 Identities = 412/602 (68%), Gaps = 15/602 (2%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| |||||| ||||| | ||| |||||| | ||| | ||| | || | Sbjct 134772 AACACCACTTTTTTGATATTCAGCGACTTTACCTTCGAATACATTTGATTTTCTTTGAAG 134831 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTA 4365 ||||| ||||||| |||| || ||||||| || || | || ||||| || | Sbjct 134832 GGAAATCATTTCCATCCAATCGAATGGATTAGCGGCATTCCAGATCTTTTTGTAACCCAA 134891 Query 4366 GAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAA 4425 || || | || || || || |||||| || || || |||| | || ||| | Sbjct 134892 -AGTGACTAATAAACGATCGGCACAAAATTCAATGTATTGAGACATGGCTCTGCTGTTCA 134950 Query 4426 TTCCAATTA-ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCT 4484 | ||||| | |||| || || || || | ||| | || || | || | | |||||| Sbjct 134951 TACCAATGAGATCT-ACTGGAAGAGCATCTGTGATGAATTCCTTCTCACTGGCTACGGCA 135009 Query 4485 TCTG---TGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA-A 4540 || ||||| | || | | ||| | | || ||||||| || || | || | | Sbjct 135010 TCACGAATGATTGTTTCGATGACTTTGGCATC-GA--GTTTATTCACCAATT-TCGAGTA 135065 Query 4541 CAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAA 4600 | |||||| ||||||| |||||| |||||||| || | || || ||||| || ||||| Sbjct 135066 GAGTAAACAGGCAAAATTACAATGTAAACCTTCATCACGACTGATAAGTTCATTGGAAAA 135125 Query 4601 CGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGA 4660 || ||||| ||||| || ||||||||||| | ||| || || | ||| ||| Sbjct 135126 AGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATCGAACAAAAACTGCCACT 135185 Query 4661 AAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT 4720 ||||||||| ||||||||||| ||||| ||||| || || | || || | | || Sbjct 135186 AAAGAATATACCTTCTACGGCTGCAAAAGCTACCAAACGTTCAGCAAAAGATTTTGAATT 135245 Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 | |||||||| | |||||||| | |||||| ||||| || || |||||||| | || Sbjct 135246 ---TGTAATCCATCTCAATGCCCAATCAGCTTTCTTCTTTACACATGGAATTGTTTCAAT 135302 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 ||| ||||||| | || |||||||| ||| | || |||||| || || |||| || || Sbjct 135303 AGCATTAAATAGTCTAGTTTTTTCATCTGGATTTTTAATATATGTATCGATTAATAAACT 135362 Query 4841 AT 4842 || Sbjct 135363 AT 135364 Score = 131 bits (144), Expect = 1e-25 Identities = 212/300 (71%), Gaps = 5/300 (2%) Strand=Plus/Plus Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 ||||| | || ||||| |||||||| || ||||| ||||| || || || || | |||| Sbjct 135451 CTATAAGTCTCGGAATGAATATTTTCAATTGCAATTTGAAAACCATAGAAACAACGAGCT 135510 Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 |||| | ||||||||| | ||| | |||| ||||| || || ||||||||| Sbjct 135511 TCTGGAATTTGAACTTCACTCATGAATTTGGTGGCTAAATTTTCATTAACGATACCGTCA 135570 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCA-GGCTTAAGT-- 5015 ||||||||||| || || | ||||||||| ||||| | ||| | | | |||| | Sbjct 135571 CTGGCTGCAAAGAAAGCTAGAACATGAGAGATAAAATGTCTTTCATTATCGTTTAATTTA 135630 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 || | ||| | | ||| || | | ||| | ||| || | |||||||| || ||| Sbjct 135631 TTCTCCCAATCATAGATATCATTTGCAAGATCGATTTCCTCTGCTGTCCAAAATGAAGCT 135690 Query 5076 TCCGCTTTTTTGTACATA-GACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 || || || ||||| ||| | |||||||||| ||| | ||| || | || |||||||| Sbjct 135691 TCAGCATTCTTGTA-ATATGCCCAAATATCACTATATTTAATTGGGAATAATACAAATCT 135749 >seq3596 Length=2072 Score = 125 bits (138), Expect = 6e-24 Identities = 372/574 (65%), Gaps = 10/574 (2%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| |||||||||| || || |||||| ||||| || ||| ||| |||| Sbjct 37 CAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGC 96 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||||| ||||| | ||| || || | || ||| ||||| Sbjct 97 CCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAA 156 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT--GTCTT 4725 |||||||| || ||||| || || || || || | || ||| | | | Sbjct 157 ATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAA--------TTTCCGCCCT 208 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 |||||| |||||||| | ||||||||||| || || |||| || | || || | Sbjct 209 CAATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCAT 268 Query 4786 TAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 || | | |||||| || |||| |||||| || || || || || ||| Sbjct 269 GGAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGG 328 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 ||||||| || || ||||| || ||||| || || ||||| || | ||||| | | Sbjct 329 TTTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAA 388 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 || |||||| | || | || | | |||||| ||||| || |||||||| || | Sbjct 389 GCTGTACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAG 448 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGT 5025 ||||||| || | | |||||| || || | | ||| | | || | || | ||||| Sbjct 449 CAAAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGT 508 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 | | || | || | |||| ||||||| | ||||| || ||||| || | Sbjct 509 GCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCT 568 Query 5086 TGTACATAGACCAAATATCAGGATACTGAATCGG 5119 | ||||| ||| || ||||| || | ||| || Sbjct 569 TATACATTTCCCAGATTTCAGGGTATTTAATAGG 602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427009138918742