Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq2461 187 8e-43 seq6260 178 4e-40 seq3418 125 2e-24 seq2455 113 1e-20 seq3890 100 9e-17 seq385 91.5 5e-14 seq2924 80.6 9e-11 >seq2461 Length=11543 Score = 187 bits (206), Expect = 8e-43 Identities = 281/393 (72%), Gaps = 16/393 (4%) Strand=Plus/Minus Query 33921 GCCCGGAGCGAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGC- 33979 |||||| || || | |||||| || | ||| ||||| | ||| || || |||| Sbjct 8944 GCCCGGCGCCAGGTTCTCGAAGCGGGTGTATTTACCGATGAAGGCCAGGCGCGTGGTGCC 8885 Query 33980 --TTGGCTCGCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGT 34037 ||||| ||||| || || || |||| || | ||||| | ||| | || ||| Sbjct 8884 GATTGGC---CCGTTACGCTGTTTACCGATAATGATTTCAGCGATGCCTTTATGCTCGGT 8828 Query 34038 GTCCGGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGAT 34097 ||||||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct 8827 CTCCGGGTGATACACCTCGTCCCGGTATACGAACATGATCACGTCAGCATCCTGCTCGAT 8768 Query 34098 CGCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGA 34157 ||| ||||| || |||| ||| || | ||||| || |||||||| |||||||| || || Sbjct 8767 CGCTCCGGATTCCCGCAAGTCGGAGTTGATCGGGCGTTTGTTCGGACGCTGCTCAAGAGA 8708 Query 34158 GCGGTTGAGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGC- 34216 ||||||||||||||||| | | ||| ||| | ||| ||||||| |||| | Sbjct 8707 TCGGTTGAGCTGCGACAGGGCAACCACCGGGCAGTTGAATTCCTTGGCCAG-GGCTTTCA 8649 Query 34217 ACTGGCGGGACATGTCGCTGACGTCCTCGGTGCGAGTTGAC-TTGCCGGAGC------TC 34269 || |||||| || ||| | || | ||| || | || | || ||||| || Sbjct 8648 ACGAGCGGGAAATCTCGGAAATCTCGTTGGTCCG-GCTGTCACCGCTGGAGCCCGGGATC 8590 Query 34270 TCCAGCAACTGCAGGTAGTCCACCACCAGCAGG 34302 | || ||||||||||||||| | || | |||| Sbjct 8589 TGCATCAACTGCAGGTAGTCGATCATGATCAGG 8557 >seq6260 Length=2033 Score = 178 bits (196), Expect = 4e-40 Identities = 197/260 (76%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 33930 GAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGCTTGGCTCGCC 33989 |||| || | || || | | ||| || | |||||| ||| || || | | || || Sbjct 1422 GAGCGGCACAAAACGAGTTTCCTTGCCAATAAACGCGGTCCGCACGGTACCGGTTTCACC 1481 Query 33990 GTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGATA 34049 ||| |||||||| ||| ||||||||| || || || ||||| |||||||||| || Sbjct 1482 GTTCCGGTGCTTGCCGAGGATCAACTCGGCAACCCCCTTGTACTCAGTGTCCGGGTTGTA 1541 Query 34050 GACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTC 34109 |||||||||||| || ||||||||||| | ||| ||||||||||||||||| |||||||| Sbjct 1542 GACCTCGTCTCGATAGACGAACATGATGATGTCCGCGTCCTGCTCGATCGCGCCGGACTC 1601 Query 34110 GCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTC-CAGGGAGCGGTTGAGCT 34168 |||| ||| | ||| || |||||||| ||||||||||| || | |||| | || Sbjct 1602 CCGCAAGTCTGCGTTCACAGGGCGCTTGTTGGGCCGCTGCTCACACTG-GCGGGACAACT 1660 Query 34169 GCGACAGCACGATCACGGGG 34188 |||| ||| |||| |||||| Sbjct 1661 GCGATAGCGCGATGACGGGG 1680 >seq3418 Length=564 Score = 125 bits (138), Expect = 2e-24 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 34044 GTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCC 34103 || ||| ||||| || ||||| | |||||||||| |||||| |||||||||||||| || Sbjct 426 GTTATAAACCTCATCCCGGTAAATAAACATGATCAAGTCGGCATCCTGCTCGATCGCACC 367 Query 34104 GGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTT 34163 ||| || |||| ||| ||||||| ||| || || ||||| || | |||||| || ||||| Sbjct 366 GGATTCACGCAAGTCGGACATCACCGGACGTTTATTCGGACGGTTCTCCAGCGATCGGTT 307 Query 34164 GAGCTGCGACAG 34175 ||||| ||||| Sbjct 306 AAGCTGTGACAG 295 >seq2455 Length=6332 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 34042 GGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCC 34101 ||||| || |||||||| ||||| |||||||| |||| ||| |||||||| || ||||| Sbjct 4698 GGGTGGTACACCTCGTCCCGGTAGACGAACATAATCAGGTCCGCGTCCTGTTCAATCGCA 4639 Query 34102 CCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGG 34161 ||| || |||||||| | | ||||| ||||| || ||||| ||||||| ||| Sbjct 4638 CCGCTATCACGCAGGTCTGCGTTGATCGGACGCTTATTTGGCCGTCGCTCCAGTTCTCGG 4579 Query 34162 TTGAGCTGCGACAGCACGATCACGGGG 34188 |||||||| || ||| | | ||| ||| Sbjct 4578 TTGAGCTGGGAAAGCGCAACCACCGGG 4552 >seq3890 Length=2016 Score = 100 bits (110), Expect = 9e-17 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 47934 AGTTCGTCCGCGAAACCCGGCGAGCGTCGATTTCGGCGATCCAGCGCAAGCTGAAGATCG 47993 ||||||| | |||| ||| || || ||||| || || | ||||||||||||||||| | Sbjct 1953 AGTTCGTGCTTGAAAGCCGCCGCGCCTCGATCTCCGCCGTACAGCGCAAGCTGAAGATTG 1894 Query 47994 GCTACAACCGCGCAGCCCGCATCATCGAGCGGATGGAGAAAGAAGGCGTAGTCACAGCGG 48053 ||||||||||||| |||||||| ||||| ||||| | | ||||| ||||| || Sbjct 1893 GCTACAACCGCGCTGCCCGCATGATCGAAGCCATGGAAATGGCCGGCGTGGTCACCTCGA 1834 Query 48054 CCGACAGCAACGGCGGCCGCGAGGT 48078 ||| ||||||| ||||| || Sbjct 1833 TGAACACCAACGGCTCGCGCGAAGT 1809 >seq385 Length=624889 Score = 91.5 bits (100), Expect = 5e-14 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 ||||| || || ||||| || | ||||||||||||||||||||||| |||||| || ||| Sbjct 599165 TCGTCGCGATAAACGAAGATCACCACGTCGGCGTCCTGCTCGATCGACCCGGATTCACGC 599106 Query 34114 AGGTCCGACATCATCGGTCGCTTGT-TCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGA 34172 ||||| || | | ||| ||||||| | || ||| |||| ||| |||||| || Sbjct 599105 AGGTCGGAGAGCTGCGGGCGCTTGTCTTCGCGGCT-TTCCACCTGACGGGAGAGCTGTGA 599047 Query 34173 CAGCACGAT 34181 |||| |||| Sbjct 599046 CAGCGCGAT 599038 >seq2924 Length=4697 Score = 80.6 bits (88), Expect = 9e-11 Identities = 136/194 (70%), Gaps = 5/194 (3%) Strand=Plus/Plus Query 40019 TCCTGTTCCTCCCACTTCAGCGTCACGGTGCCGTCGTCATTGAAGACCATGTCGATGCCG 40078 ||||| | |||||| ||| ||||||| ||||||||||||||| || || | || Sbjct 711 TCCTGCTGCTCCCATCTCACCGTCACGCTGCCGTCGTCATTGAGTGTCAGCTCAAGCTCG 770 Query 40079 TCCGTCTCGGATAGCAGTTCCATCACCTGATCCCACGCTTCATCCGGATCCGTGTCCAGG 40138 || || || | | || || ||||| |||||| | |||| ||||||||| || Sbjct 771 TCGGTATCAGCGATCACGCTCAGCACCTCCTCCCACTCCCGATCCCCATCCGTGTCAAGA 830 Query 40139 CGATGGAT---CGTCACCGTGCGCAGGTCCTGCGCTTTC-GGTGAGTTGATCATCTCCGA 40194 ||||| || ||||||| |||| | ||||||| | ||||| ||||||||| || Sbjct 831 CGATGAATNNCCGTCACCCAGCGCTGCGCCTGCGCGACCGGGTGA-TTGATCATCGATGA 889 Query 40195 TATGCGGAGCCCCA 40208 | ||| || |||| Sbjct 890 GACGCGCAGACCCA 903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160449186565260