Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_030918.1 Length=36629 Score E Sequences producing significant alignments: (Bits) Value seq3974 289 7e-74 seq3067 150 4e-32 >seq3974 Length=4040 Score = 289 bits (320), Expect = 7e-74 Identities = 559/814 (69%), Gaps = 28/814 (3%) Strand=Plus/Minus Query 979 GCTATGTTTATGCCCTAAGTCACGTTAGACACCCCaaaaaaaCCACCCTGCACGGTGGTT 1038 ||||||||||||||||| || |||||||||| ||||||||| ||||||| |||||||| Sbjct 2945 GCTATGTTTATGCCCTAGGTAACGTTAGACATCCCAAAAAA-CCACCCTTGCCGGTGGTT 2887 Query 1039 GAGATGGAACG-TAGGCATGAACAGAACCGAAATACCCCGCGACAACAACGTCCGCTGGG 1097 || | ||| |||||||||||| ||||||||| || | ||| | | | || |||| Sbjct 2886 ATGAATGGACGCTAGGCATGAACAAAACCGAAATCCCGCTTGACCCAACCCTGCGATGGG 2827 Query 1098 AGTGGATCAAATACCAGCTCCGCGCCAGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTCCC 1157 | |||||||||||||| || || || | ||| |||| || || |||| || | Sbjct 2826 AATGGATCAAATACCAACTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCGTGAAC 2767 Query 1158 TCGACGTATCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAATCCCTACCCTCGGGTAGAG 1216 | ||||| | ||| | || ||||| ||||| |||| | | || || || | ||| Sbjct 2766 TTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCGCGAATGGAG 2708 Query 1217 CGCGCCATCGCCGCTGTGCTCGACCTCAGCCCCCTGGTGCTGTGGCCTGAGCGCTGGCTC 1276 || || || ||| || ||| | ||||| || | | ||||||| || || ||| | Sbjct 2707 CGAGCTATTGCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGTTGGAAC 2648 Query 1277 GACGACGAGAATCCGAAGCGGCAACGGCCCAATCGTTCGGAAACCCTCAAGGCATATGAC 1336 | ||| | || | || ||| | || | ||| | ||| ||| | Sbjct 2647 GCAAACGGCACCCCACACCGTATTCGGGTGCAGCGCGCAGAA---CACAACGCAACT--- 2594 Query 1337 AGTGTCATATGCCGATCCGGGAAAAATAACAGATACGCTGA--CCAAGCG-CAGCGTAAA 1393 || || ||| | | ||||| | ||| | || || || |||||| Sbjct 2593 ----TC-TA-GCCAAG------AGCATAACCCA---GCTTATGCCCTTCGACACCGTAAA 2549 Query 1394 GCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACATCTTCG 1453 ||| | ||| || | |||||| ||| || || || || || | ||||||||| Sbjct 2548 ACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACATCTTCT 2489 Query 1454 ATGTTCCGCAGCCAGCTCGCGCTATACCCGGTGAGTGCAACTACGCCGCCCAGGTCAGCG 1513 ||| || ||||||| || ||||| || || | ||||| | ||||| |||||||| | Sbjct 2488 CTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGTCAGTG 2429 Query 1514 AACTGGTCAGCGAAATACTGAAGGCCGCCAACCTCGACCGTTACGAGATTGCCGCCCGCA 1573 ||||| ||||||| || ||||| | || | || ||||||||||| |||| || |||| Sbjct 2428 AACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGCACGCA 2369 Query 1574 TGTCGCGCCTCTCCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAGTCCCG 1633 |||| ||| | || |||||||||||||| ||| ||||||| ||||| |||||||| || | Sbjct 2368 TGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAGCCCAG 2309 Query 1634 CCCGAGTTGATCACAACTTGCCTTTCTACCGCGCCGCCCTCCTGGAAGACGTCTGCGCGA 1693 ||||| || || ||| |||| ||||| | ||| | || || ||||| || || | Sbjct 2308 CCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTGTAGCA 2249 Query 1694 GCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGTGGCCGCGTGGCCTATGGCCGAG 1753 | ||| | | ||| |||||||||| || || |||||||||||||| || || || | Sbjct 2248 GTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGGTCGCG 2189 Query 1754 ACGCACTGCTCGCCGAACTGGGCCGCCTGGAGCG 1787 | ||||| ||| || || || || |||| ||| Sbjct 2188 ATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 2155 Score = 129 bits (142), Expect = 1e-25 Identities = 213/302 (71%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 295 GATCTGCCGCTGGACGCGCTTGGCGTACAAGTGGTCATCCAGGCGGATGACGTAGACAGC 354 || ||||||||||| | || || || | ||||||||||| ||||||||||| ||||| Sbjct 3647 GAACTGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGC 3588 Query 355 TTCGTCACGAACCTCATTGCAACTGTGGTCAATCATCACCGTATCGCCATCGCTCAACAG 414 || | || | ||| ||||||||||||||||| |||||||||||||| | || Sbjct 3587 CTCTCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAG 3528 Query 415 TGGCTCCATTGAGTCACCGCCGATGCGGACGGCCGACATATTCGCGATCTCCAGGCCTTG 474 | |||||| || || ||| | | |||| || |||| ||| ||||||||||| Sbjct 3527 TCCCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTG 3468 Query 475 CTTCCGCAAGC-TGTA-GCGAGTGAATGCCAACTGAGCGAGTATCTGCGCCCCCTCTGTC 532 ||| || |||| ||| ||| ||||| || | ||| | || | ||||| || || Sbjct 3467 CTTGCG-AAGCGAGTACGCG-GTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTC 3410 Query 533 CAGGAGCCGTGACCAGCGCGCACCCGAGCGTCATACAGAGGGATATAGGCGTAATTGTCG 592 |||| |||||| || || | | ||||| |||| ||| | || ||||| ||||| Sbjct 3409 CAGGCGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCC 3350 Query 593 TC 594 || Sbjct 3349 TC 3348 >seq3067 Length=6736 Score = 150 bits (166), Expect = 4e-32 Identities = 479/727 (66%), Gaps = 48/727 (7%) Strand=Plus/Minus Query 8839 CATTGAGCGAAACCGCCCCGGCCTTGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 8898 |||| ||||||| ||||||||| || ||| |||||||||||||||||| ||||||||| Sbjct 2330 CATTAAGCGAAATCGCCCCGGCGC-GCTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 2272 Query 8899 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGGCGCCTGGCG 8956 ||||||||||||||||||||| ||||| ||| | |||| ||| | |||||||| Sbjct 2271 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 2214 Query 8957 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGATGCCCTGCGTC--GCGC--TGCGCTGGG 9012 | || || |||| || ||||| ||||||| | ||| | |||| || |||| Sbjct 2213 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA----CAGCGACAAGCGCCTGGCCATGGG 2158 Query 9013 CGGCCGCCGCTTCAACATGGACATGTACCAGGGAACGGCTGATGCACTCGATCTGATCTG 9072 | | || |||| ||||| || ||| || || | | || || | |||| | Sbjct 2157 TGCCAGCAAGCTCAAGATGGAAATCTACAGCGGCACCCAAAACGAGCTGGAACAGATCCG 2098 Query 9073 CGCGGCCGGTGGCTTCGCCGAGCCGGCCGAGGCGGTCACCTTGCTCCTACACAACGTTGC 9132 | | |||||| |||| ||| | | | | || |||| || | | || || || Sbjct 2097 CACCGCCGGTAAGTTCGACGAAACAGACCATGCACTCACGATGACCATTCATGGTGTCGC 2038 Query 9133 CGAAAT-TGCAGAGCGTGACGCGTCA-CGTTTTGCCGAGT--TGATCCAAAAGAGAAGCC 9188 | | | | || | ||| || || |||| || || |||| |||| ||| | Sbjct 2037 TGCGTTGTCCCGAAC-CGACCCGGCAGCGTT---CCAGGTACTGAT-CAAAGGAGGA--- 1986 Query 9189 ATCCAGGGAGGACCAAGCGATGAGCCTACGCGCCGTCAACCTCGCAAAAATCCACATCGC 9248 | ||| ||||| || | ||| || | | | || ||||||||||| Sbjct 1985 AGACAG---TGACCACACG--TAACCT----GCAATTGAGC-----AAGATCCACATCGC 1940 Query 9249 CAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTGGCTCGCGTCGCGGG 9308 |||| | || || |||| || || ||||| || || ||| ||| ||||| ||||| Sbjct 1939 CAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTGGGCCGCGTGGCGGG 1880 Query 9309 CGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTACTGGTCGAACTCCA 9368 ||||| |||||||| ||| | ||| |||||||||| | ||||||| ||| | Sbjct 1879 TGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTACTGGCCGAGTTTGC 1820 Query 9369 GCGCCTGGGCTGG------AAACCGAAGAGCAACCGGCAGGGCCGGGCGACGCCAAAAGT 9422 ||| |||||||| ||||||| | || ||| ||||| | || | | Sbjct 1819 CCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGCAAGGGACCGATGGC 1763 Query 9423 GCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTGGCCAGCGCCCATCG 9482 | ||| | ||||| || || || | ||||| || | || ||| ||| | || Sbjct 1762 GGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTCGCCGAGGCCAAACG 1703 Query 9483 CCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTCGAGCGGGTCGAGTG 9542 | ||||| || |||||| ||||||| |||||||||| |||||||||| || || || Sbjct 1702 CTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTCGAGCGAGTGGAATG 1643 Query 9543 GCTGGAC 9549 ||| ||| Sbjct 1642 GCTAGAC 1636 Score = 100 bits (110), Expect = 7e-17 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 6380 GCCTGGGGCGAGCGTCCGCCCGTCTTCGTCCAGCTGCTCGCCGCTGAGGTGGCCCGCAGC 6439 || |||||| || |||| | ||||| | ||||||||||| || || || || | Sbjct 5466 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 5407 Query 6440 AGCCAGACGAAGGCCGGCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 6499 | | |||| |||||| || || |||||||||||||| || |||||||| | ||| Sbjct 5406 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 5347 Query 6500 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGTCGTGTCCTGGCCGCGCTG 6559 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 5346 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 5287 Query 6560 AGCCGCATTGAGTGCCCGGCCCTGGGCGAGGCGGTGACCTCGGTCGAGTG 6609 | |||||||| || ||||||| |||| | || ||| ||| | |||| Sbjct 5286 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTG 5237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117080390579508