Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_030919.1 Length=42418 Score E Sequences producing significant alignments: (Bits) Value seq3699 868 0.0 seq1335 100 8e-17 seq2982 86.0 2e-12 >seq3699 Length=658 Score = 868 bits (962), Expect = 0.0 Identities = 565/621 (91%), Gaps = 0/621 (0%) Strand=Plus/Plus Query 21188 CATACAAGGACGTAGTTGGTGTGTTGACTGTGTGTTATGGCCACGTCGGAAAAGACATCA 21247 ||||||| || | |||||||| | |||||| ||| | || || ||||||||||||| Sbjct 1 CATACAAAGATATTGTTGGTGTATGGACTGTATGTCACGGGCATACAGGAAAAGACATCA 60 Query 21248 TGCTCGGTAAAACGTATACCGAAGCAGAATGCGAAGCCCTCCTGAATAAAGACCTTGCCA 21307 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 61 TGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCA 120 Query 21308 CGGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATATACCGGAAACAACGCGCGGCG 21367 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 121 CGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATATACCGGAAACAACGCGCGGCG 180 Query 21368 CTCTTTATTCGTTCGTCTATAACGTGGGCGCAGGCAATTTCAGAACATCGACGCTTCTTC 21427 ||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 181 CTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTC 240 Query 21428 GCAAAATCAACCAGGGCGATATCAAGGGCGCATGTGACCAGCTACGTCGCTGGACATACG 21487 ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| | Sbjct 241 GCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATG 300 Query 21488 CTGGCGGTAAGCAATGGAAAGGGCTGATGACTCGCCGTGAGATTGAGCGTGAAGTCTGTT 21547 |||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||| Sbjct 301 CTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTT 360 Query 21548 TGTGGGGGCAGCAATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCAT 21607 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCAT 420 Query 21608 CGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCA 21667 ||||||||||||||||||||||||||||||||||||||| || || ||||||||| || Sbjct 421 CGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCA 480 Query 21668 GCGCGATAAAAAAGTCAGTGAACTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCA 21727 |||||| ||||| | ||| |||||||||| ||||| ||| | ||||||||||||||| Sbjct 481 GCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGAT 540 Query 21728 GCGCCAGCGTGATGCTGATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAA 21787 |||||||||||||| || |||||| |||| ||||||||||||||||||||| ||||||| Sbjct 541 GCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAA 600 Query 21788 AGCTGAAAATGATGCTCTTCG 21808 |||||||||||||||||| || Sbjct 601 AGCTGAAAATGATGCTCTGCG 621 >seq1335 Length=14169 Score = 100 bits (110), Expect = 8e-17 Identities = 69/78 (88%), Gaps = 4/78 (5%) Strand=Plus/Minus Query 5127 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTACGAG 5186 ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 11219 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11160 Query 5187 GATG----TTATTGCTGC 5200 |||| | |||||||| Sbjct 11159 GATGCTGTTCATTGCTGC 11142 >seq2982 Length=1456 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3317 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3368 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135603480439440