Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq3178 199 1e-46 seq6106 159 1e-34 seq1172 136 1e-27 seq2439 111 5e-20 seq2068 100 9e-17 >seq3178 Length=10189 Score = 199 bits (220), Expect = 1e-46 Identities = 375/549 (68%), Gaps = 2/549 (0%) Strand=Plus/Plus Query 7045 CAATGAAGACCACGCCCACCTACAAGACGCTCCTCTCGCTTTCCTATGGGCTGCCTCCAG 7104 ||| |||||||| |||||||||| || || || || | ||||| | || || Sbjct 744 CAACGAAGACCATGCCCACCTACTGGATGCAGACATCCGGATCATGTGGGCGTCGTCGAG 803 Query 7105 CTTCACCAAGCAGGGGAGGACGGTACTGGGTCAGTGCGAAGAGGTGACGTTCCGCTGTGG 7164 |||| |||||||||| | || || |||| ||| ||| | || |||| ||| || Sbjct 804 CTTCGCCAAGCAGGGTCGCACAGTCTTGGGCCAGGCCGAGCAAGTAGCGTTTCGCGCCGG 863 Query 7165 AGCCTGGCAGAAGGGTAGGCAGGAACAGCAGATGATCCGTTGGTTCGGATACCTGCCGAG 7224 | |||||||| | | | ||| || |||||| ||||||||| | ||||| Sbjct 864 CGGTTGGCAGAAAGCCATGATGGAGCAACAGATGCGTGATTGGTTCGGCGATGTGCCGGC 923 Query 7225 GTTTCTGATCACCCTGGCTGCTGACTACTGCTCCCAGTGCTCCGACGCGGAGTTCTGCGC 7284 || | || ||||||||||| ||||||||| |||||||| |||| ||||||||||| Sbjct 924 ATTCATCATTACCCTGGCTGCCGACTACTGCGCCCAGTGCAGCGACCTTGAGTTCTGCGC 983 Query 7285 ATTGGTCGAGCATGAGCTCTACCACATCTGCCAAGAGCACAACCAATATGGCGAGCCCAA 7344 ||| ||||||| ||||| || ||| | || | | | || | || || | || Sbjct 984 CTTGATCGAGCACGAGCTTTATCACCTGGCTCACGCGACCGACAAGTACGGTCAACCAGC 1043 Query 7345 GTTCACCGAGGAGGGCTTTCCAAAGCTGAAGCTCCGCGGGCATGACGTCGAGGAGTTCGT 7404 |||||| | || || || ||| | ||||| | || || ||||| || |||||||| Sbjct 1044 ATTCACCCAAGACGGTGCACCGAAGATCAAGCTGCAGGGCCACGACGTGGAAGAGTTCGT 1103 Query 7405 CGGCGTGGTGAGGCGGTACGGCCCAAGCAAGGACGTGCAGTATCTCATCGACGCTGCTAG 7464 ||| || || | || || || ||||| ||||| || | | || ||||| | Sbjct 1104 CGGTGTCGTCCGCCGCTATGGTGCAAGCCCTGACGTTCAAGCGTTGGTGGATGCTGCAAA 1163 Query 7465 CAGGCCTCCAGAGGTGGCCAAAATTAACATTTCGAGAGCCTGCGGTACGTGCCTGCTGAA 7524 ||| ||| | ||||||| ||| | |||||| |||| |||||||| || || ||||| | Sbjct 1164 CAGTCCTGCTGAGGTGGGGAAATTGAACATTGCGAGGGCCTGCGGAACCTGTCTGCTCAG 1223 Query 7525 GTCGGCAT-AGCCACGACAGGCCCATGACAGGAAGAAAAACGATGGCAACCCTGAACAGC 7583 ||||| | | | ||||||| | ||| ||| || || |||||| ||||||| | Sbjct 1224 ATCGGCCTGATTCTTGACAGGCTCTAGAC-GGATGAGAATTTATGGCAGCCCTGAAAAAT 1282 Query 7584 GACGTGAAG 7592 || |||||| Sbjct 1283 GAGGTGAAG 1291 Score = 183 bits (202), Expect = 1e-41 Identities = 198/260 (76%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 7659 GAATTCGGCATCGAGGTCAGTCGGCAGCAGATCGAGTCGCACGACCCGAACAAGGTGTGC 7718 |||| ||| | | ||| || || |||||| | ||| |||||||||| | |||| | || Sbjct 1344 GAATACGGGGTTGTGGTGAGCCGCCAGCAGGTGGAGACGCACGACCCAACCAAG-TCCGC 1402 Query 7719 AGC-AAGGGCCTTGCCGCGAAGTGGCGGATCCTCTTCGAGGACACCCGCAAGCGCTTCCG 7777 | ||||| || || | ||||||| || ||| ||| | |||||| | ||||| ||||| Sbjct 1403 GGGTAAGGGTCTGGCGGTGAAGTGGGTGACCCTTTTCCACGACACCAGGAAGCGGTTCCG 1462 Query 7778 CGAGGAGATCGCCGACATCCCGATCGCCAACCGCGCCTACCGACTGAGGGCATTGGGTCG 7837 ||||||| ||| || |||||||| ||||||||||||| ||| || | | |||| || Sbjct 1463 AGAGGAGACCGCAGAGATCCCGATTGCCAACCGCGCCTTCCGGCTTCGTGGCCTGGGGCG 1522 Query 7838 GATGGCTGAGCGCGCCGAGGGCATGCGAAACATGGCCCTGGCTGCCCAGCTTTACGAGCA 7897 | |||| | | |||||| |||||| ||| |||| ||| ||||||||||||||||||| Sbjct 1523 GCTGGCCGGGAAGGCCGAGAACATGCGCAACCTGGCGCTGACTGCCCAGCTTTACGAGCA 1582 Query 7898 GGCCGCCAAGGAGTCGGGTG 7917 || ||||| ||| |||||| Sbjct 1583 AGCAGCCAAAGAGACGGGTG 1602 >seq6106 Length=814 Score = 159 bits (176), Expect = 1e-34 Identities = 279/410 (68%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 4555 GGCGCGGAAGGCTATCGCCGAC--CGAGAGCGGCGGGAGATCAAGGTTCGGAAGGAGAGG 4612 |||||| ||||| | |||||| |||| ||| || |||||||||| || ||||||| | Sbjct 199 GGCGCGCAAGGCCCTGGCCGACATCGAGCGCGCCG--AGATCAAGGTCCGCAAGGAGAAG 256 Query 4613 CTGAAGAGTAAGGCGGATCACCTGCGCGAGGCTCAGCAGGCATTCAACGAATTCATTCGC 4672 ||||||| | |||||||||||| || | ||||||||||| || | | ||||| Sbjct 257 CTGAAGAACAGGGCGGATCACCTCAAGGACACACAGCAGGCATTTAATGCCTGGGTTCGC 316 Query 4673 CTGCGCGACGCCGACCAGCCGTGCATCAGTTGTGGCCGCCACCACGATGGGCAGTNNNNN 4732 || || || | | ||| ||| |||| || |||||||| || | || || | Sbjct 317 GCCCGTGATGCGGCACTGCCATGCGTCAGCTGCGGCCGCCATCATGGGGGTCAATACCAC 376 Query 4733 NNNNNNNNNNNNNGCACGGTTGCCGCCAGCCCAGAGCTTCGCTTCGAGCCGCTCAACGTC 4792 |||| || | || | ||||||||| | || |||||||| |||| | Sbjct 377 GCCGGCCACTACCGCACTGTAGGAGCGAACCCAGAGCTGAGGTTTGAGCCGCTGAACGCC 436 Query 4793 CACAAGCAGTGCGCCCCATGCAACAACCATAAGTCAGGCGACATCGTGAACTACCGGATC 4852 |||||||||||||| ||||||||||| ||||| || || | || ||||| ||| Sbjct 437 TGGAAGCAGTGCGCCCCGTGCAACAACCACCTTTCAGGAAACCTCATCAATTACCGAATC 496 Query 4853 AACCTGGTGCGCAAGATCGGCGCCGAGAACGTGGAGTGGCTGGAAGGCCCTCATGAGCCC 4912 || | | | ||||||| || || |||| ||||| ||||||||||||||| || Sbjct 497 TCGCTCCTACAGAGAATCGGCGAGGAAAAAGTGGCATGGCTTGAAGGCCCTCATGAGGCC 556 Query 4913 CTGAAACTGACCATCGAAGAAATCAAAGCGCTGAAGGCCCAGTTCCGGGC 4962 ||| ||| | || || | || ||| ||| ||| | | |||||| Sbjct 557 AAGAAGTACACCGTGGATGAGTTGAAGGCGATGACCGCCGACTACCGGGC 606 >seq1172 Length=24145 Score = 136 bits (150), Expect = 1e-27 Identities = 208/291 (71%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 31673 GGGCGACGGCTGGCGGTACCGCGGGCGCGGGCTGCTGCAGATCACCGGCCGGGCGAACTA 31732 ||| ||||||| |||||| || ||||| || | ||||| ||||| || |||||||| Sbjct 5838 GGGTGACGGCTTCAAGTACCGTGGCCGCGGCCTAATCCAGATTACCGGACGTGCGAACTA 5779 Query 31733 CCGCGCCGC-CGGCGACGGGCTGGGCCAGCCGCTGGAGCAGGAACCCGAGCTTCTCGAGC 31791 ||| || |||||| | ||||||| | |||| | || |||||||| ||||||| Sbjct 5778 T-GCGGCGTGCGGCGAGGCCCTGGGCCTGGACCTGGTCAATGAGCCCGAGCTGCTCGAGC 5720 Query 31792 AACCGGAGTGGGCGGCGATCTCGGCGGCCTGGTGGTGGGCCAGTCACGGCTTGAACGACC 31851 | || || |||||||| |||||||| |||| ||| || | ||| ||||| | Sbjct 5719 AGCCACAGCACGCGGCGATGTCGGCGGCGTGGTTCTGGTCCTCCCGCGGACTGAACACAC 5660 Query 31852 TGGCCGACCGCGGCGAGTTCGCCGCC-ATCACTCGGCGCATCAACGGCGGCACGAACGGC 31910 |||| || | ||||| || || | |||||| |||||||||||| || || ||||| Sbjct 5659 TGGCAGATCAAGGCGATTT-GCTGAAGATCACTAAGCGCATCAACGGTGGTACCAACGGA 5601 Query 31911 CAGGCGGAGCGCCTGGCGCTGTGGGAGCGGGCGAAGAGGGTGCTGTCGTGA 31961 | ||| || || | |||||||| | |||| || ||||||| ||||| Sbjct 5600 CTGGCCGACCGTCAGGCGCTGTATGGCAAGGCGCTGAAGGTGCTGGCGTGA 5550 Score = 84.2 bits (92), Expect = 7e-12 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 31332 ATGCCCATCACTGAGCAGCAGTTGCTGCATATCCTCCCGAACGCCGGCTCG-AGGGCCGG 31390 ||| | |||||||||||||| ||||||| ||||||||||||||||| ||| || ||||| Sbjct 6083 ATGTCGATCACTGAGCAGCAACTGCTGCAGATCCTCCCGAACGCCGG-TCGCAGTGCCGG 6025 Query 31391 CGTTTTTGTTGGTGCGCTGAACCGCGGGATGACGCGCTTCGGTATCACGTC--GCCTGTG 31448 |||||| ||| |||| | || | ||||| || | | || |||| | | || Sbjct 6024 CGTTTTCGTTCCTGCGTTAAATACGGCCATGACCCGGTATGCCAT--CGTCAATCGTCTG 5967 Query 31449 CGCGCGGCGACGTTCCTCGCCCAGGTCGGCCACGAAAGCGGCCAGTTG 31496 ||| || | ||| ||||||||||||| || || ||||| ||| Sbjct 5966 CGCATCGCCGCCTTCATCGCCCAGGTCGGTCATGAGTCAGGCCAATTG 5919 >seq2439 Length=2533 Score = 111 bits (122), Expect = 5e-20 Identities = 298/447 (67%), Gaps = 34/447 (8%) Strand=Plus/Minus Query 41483 CCGTCGTCGTCC------TCGCCGCGAGTGGTGATGTTCAGCAGTGCGGACAGCACGTAA 41536 ||||||||||| |||||| || |||||||||||||| || ||| |||||| Sbjct 1576 CCGTCGTCGTCGCGGATATCGCCG---GTCGTGATGTTCAGCAGCGCACACATCACGTAG 1520 Query 41537 CGCTTGCCGTAGCTGACCGATGATCCAAGAGACTGAACGGCGTTCTTGCTGCCACTT--- 41593 |||||||| ||| | |||||| |||| || ||| ||| || |||| || || Sbjct 1519 CGCTTGCCATAGGTAGTCGATGAGCCAACAGCCTGTACGTCG---TTGCGACCTTTTCCG 1463 Query 41594 GTGTCTAGCGGAACGAGCATCGTCGTCTGCTCTCGGTGTCCGGCGCAGTGCATCAGAATT 41653 | || | ||| | | ||| || || ||||| ||||| || | | |||||||| ||| Sbjct 1462 ATATCAATCGGCAGGCTCATGGTGGTTTGCTCGCGGTGGCCACCCCGGTGCATCAAGATT 1403 Query 41654 CCAGTAAC-CGAAACGCCAGTCTGAACAGTCTCGACGCGGAAGCTCACTGCGAAACCGAA 41712 ||||| || | | |||| | | | | | || || |||| | | || || ||| Sbjct 1402 CCAGTGACACTGATCGCC-TTTTCAGCGTTTTCCACCTTGAAGGTGATGGCAAACCCGTG 1344 Query 41713 CCGCTGCATGATCGGCTTCACGATGTCGTTGATGTCTTCGAAGGTCGCGTAGTTGCTGCG 41772 | |||||||||||||||||| | ||| |||||| |||| || |||||| | | | Sbjct 1343 CTGCTGCATGATCGGCTTCAAGGTGTGTGTGATGTGGTCGAGCGTGGCGTAGGAGTTTCC 1284 Query 41773 CTTTTGGCCGTTGACGGTGATAGCG-CCACGCTCGGCAATGNNNNNNNNTTCGCTTTGCA 41831 | || ||| |||| || ||| |||| ||| | || |||| Sbjct 1283 TGTGTGTAGGTTAACGGCACCTTCGAACACAGTCGG-GATG---------TTGCACTGCA 1234 Query 41832 TGGCGGCCATGGATGCGTTGAACTCAGCCT-CTGCGCTGC--GGGACTGCATCCGTTCGT 41888 | ||||||| | || ||||| ||| | || ||| | ||||||||| || |||| Sbjct 1233 TTTCGGCCATTGCGGCATTGAA---AGCTTGCTCAGCTTCCTTGGACTGCATGCGCTCGT 1177 Query 41889 GCATGGCCATAAGCCGCTCCATCTTCT 41915 ||||||||| || ||||||||||||| Sbjct 1176 GCATGGCCAGCAGGCGCTCCATCTTCT 1150 >seq2068 Length=4790 Score = 100 bits (110), Expect = 9e-17 Identities = 196/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 31674 GGCGACGGCTGGCGGTACCGCGGGCGCGGGCTGCTGCAGATCACCGGCCGGGCGAACTAC 31733 ||||| ||| | ||| ||||| ||||| ||| | ||||||||||||||| |||||| Sbjct 2578 GGCGATGGCCAGAAGTATCGCGGCCGCGGCCTGATCCAGATCACCGGCCGGCGCAACTAC 2637 Query 31734 CGCGCCGCCGGCGACGGGCTG---GGCCAGCCGC---TGGAGCAGGAACCCGAGCTTCTC 31787 | || | | | | ||| ||| | || || ||| |||| ||| | || Sbjct 2638 CTGGCGTGCAGTCAGGCACTGTTCGGCGATGAGCGTTTGTTGCACCAACCGGAGTTGCTG 2697 Query 31788 GAGCAACCGGAGTGGGCG-GCGATCTCGGCGGCCTGGTGGTGGGCCAGTCACGGCTTGAA 31846 ||| ||| | |||||| |||| || || || |||| ||| | | |||||||| Sbjct 2698 GAGACGCCGCAATGGGCGTGCGAA-TCTGCCGCGTGGTTCTGGCAGCGCAATGGCTTGAA 2756 Query 31847 CGACCTGGCCGACCGCGGCGAGTTCGCCGCCATCACTCGGCGCATCAACGGCGGCACGAA 31906 ||| ||||| |||| | | ||||| || | ||||| ||||||||||| || ||| || Sbjct 2757 CGAGCTGGCTGACCAGGACCAGTTCACCACGATCACCCGGCGCATCAATGGTGGCCTCAA 2816 Query 31907 CGGCCAGGCGGAGCGCCTGGCGCTGTGGGAGCGGGCGAAGAGGGTG 31952 ||| | || | | || || ||||||| |||||||||| |||| Sbjct 2817 CGGTCTGGAGAACCGTATGCAACTGTGGGCGCGGGCGAAGGCGGTG 2862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156769526289060