Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq1645 273 5e-69 seq1066 228 2e-55 seq7039 147 5e-31 seq54 82.4 2e-11 >seq1645 Length=4731 Score = 273 bits (302), Expect = 5e-69 Identities = 441/637 (69%), Gaps = 28/637 (4%) Strand=Plus/Minus Query 31613 ACTGACAGTTCGCGCATCGCCGCTGTTGCCAGAAAGCCCGACCGAGACTGATAGCGCTTA 31672 || || |||||||||| ||||| || ||||| || || || || || |||||| | Sbjct 4231 ACGGAAAGTTCGCGCAAAGCCGCCGTCGCCAGGAACCCAGAGCGCGAGGCATAGCGATGG 4172 Query 31673 TCCACCTTCACGCGCTCATCGATCCGCTGCAGAAGGTGTTCCGGGAGCGTCGCATTAAAG 31732 || | ||| ||||||||||| || | || ||| || || || || | || || || Sbjct 4171 TCTTTTTGCACTCGCTCATCGATACGATTCAAAAGTTGCTCAGGCAGTGAGGCGTTGAAC 4112 Query 31733 CGTACGGCCTTGCCCAGGTACGGGGTCACGTCGAAGTCAACCACCGCCCATACGCCACCT 31792 | || | |||||||||||| || || | || ||||| | ||||||||| |||||||| Sbjct 4111 CTGACTGACTTGCCCAGGTAAGGAGTGAGATCAAAGTCGATCACCGCCCACACGCCACCC 4052 Query 31793 TCGAAGTCCGGATTCTTCATATGGGCGTCAACGTCCTGCGGCTGGGGTAGCTCTTCGCCG 31852 | ||||||||||||| || |||| |||| || || | ||| || ||| || | Sbjct 4051 GCAAAGTCCGGATTCTCCAAATGGACGTCGACCTCTCTAGCCTGAGGAAGCCGCTCCTCA 3992 Query 31853 TCCGTAACCAAGCCTTCGAAGTGCAAGGCCAGCGCCTCTTCTACATTGGCCAGGGCCTCG 31912 || | |||||| || |||| ||||| || | || || ||||| |||| || ||| Sbjct 3991 TCAGCAACCAATCCCTCGAGGTGCAGCGCTAAAGCTTCGCGGACATTATCCAGAGCTTCG 3932 Query 31913 GACACCGTAGCGCCGGCAGAGAAGCAACCCGGCACATCGGGCACAGTCACGCCATAGTCA 31972 || | || | ||| ||||| |||||||| ||||| || || || ||||||| || || Sbjct 3931 GAAAAGGTTGTGCCCGCAGAAAAGCAACCTGGCACGTCCGGGACGGTCACGCTGTAATCT 3872 Query 31973 GAATCAGGGTCTTTGTGTAACACCACGGGGAATTTCATGGCT-CTACTCCG--TGAG--- 32026 ||||||| ||||||||||| |||||| || |||||||| | || || | |||| Sbjct 3871 GAATCAGCGTCTTTGTGTATCACCACTGGAAATTTCATTTTTCCTCCTTTGAATGAGCCG 3812 Query 32027 ----------ATTGACC------------GGCCTCACTTGAGGCCGGCTTGTTTCAGTAT 32064 ||| ||| | | |||||| ||||| ||| ||||| || Sbjct 3811 CAGCGGGATCATTCACCACATAACCTACGGTCATCACTTCAGGCCTGCTGATTTCAAAAT 3752 Query 32065 GTTGTTCAGGGTTCCTTTCGGTATCGTCGAGGACGGATGTTGAACCGTCACCTTTCCAGG 32124 | ||| || ||| || || | |||| || ||||| ||||||||||| || || Sbjct 3751 GCTGTGCAAGGTCCCCTTGGCTATCTCTGATTTAGGATGAGGAACCGTCACCCGGCCGGG 3692 Query 32125 CTTTGAAGGATGTTTGAACTGGTGGTGGCTACCTTTCACCGCCACTTCATACCAGCCATC 32184 ||| | | || ||||| || ||||| || |||||| ||||||| ||| |||| ||||| Sbjct 3691 CTTGGTTGAGTGCTTGAATTGATGGTGACTGCCTTTCGCCGCCACCTCAAACCATCCATC 3632 Query 32185 CTCCAACAGCAAATCAATCACTTCCCTACTCCGCATC 32221 | ||| |||||| ||||| || || || || | |||| Sbjct 3631 CGCCATCAGCAAGTCAATTACCTCTCTGCTTCTCATC 3595 >seq1066 Length=33981 Score = 228 bits (252), Expect = 2e-55 Identities = 785/1208 (65%), Gaps = 42/1208 (3%) Strand=Plus/Minus Query 1124 GTGGCACGACATCGACTGGTGTCGG-GTCCAGCGGAATGTCCGGGGAATGCAGGTACGGA 1182 |||| || |||||| ||| ||| || || || |||| | || |||| | || | Sbjct 30607 GTGGGACAGCATCGATTGGA-TCGCCGTACAACGTCGTGTCAGAGGGCTGCAAGCGCGTA 30549 Query 1183 TTGCGAAGGCTTGTCGGGAAGGCAAATGGCGCAGGGTGAAGGCCCTACAACGGATGCTGA 1242 ||| ||||||| | || |||| | || |||||| ||||| ||| || |||||| Sbjct 30548 TTGTGAAGGCTGTACAAGATGGCAGACATAACAAGGTGAAAGCCCTGCAATGGCTGCTGA 30489 Query 1243 CCCGCTCGA-CGTCGGCCAGGTACCTGGCTGT---ACGGAGAGTCACTGAAAACCAGGGC 1298 | | |||| | ||| ||| | || |||| |||| || |||||||| | ||| Sbjct 30488 CTCACTCGTTCAGTGGCAAGGCATTTG-CTGTGAAACGG---GTGTCTGAAAACAAAGGC 30433 Query 1299 AAGCGCACGGCGGGAGTCGACCGCGTGCTCTGGGATACGCCTGACACCAAGTGGAAAGCG 1358 || || | || || ||| || ||| |||||||| ||||| ||| Sbjct 30432 AAAAATACCCCCGGCGTGGACAAGGTTACTTGGAATACGCCTAGGGCCAAGCTCGGCGCG 30373 Query 1359 GCACAAGGGTTGAAAAGGCGCGGGTACCAACCTCGGCCTCTACGGCGAGTGTTCATCCCG 1418 | | ||||| |||| || ||| || | || || ||| ||||| | || ||| Sbjct 30372 ATAGAGTCGTTGACGCGGCGAGGTTACTCGCCGCTCCCGCTTCGGAGAGTGCTTATTCCG 30313 Query 1419 AAGTCGAACGGAAAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCAG 1478 ||| ||||| || | | || || || || || | |||| | |||| |||||| Sbjct 30312 AAGAAAAACGGCAAAACGAGACCTCTTGGAATTCCCGCGATGAAATGCCGGGCCATGCAG 30253 Query 1479 GCACTCTACCTGCTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAACAGCTAT 1538 || || | ||||| |||||| || || || ||||| |||||||| |||||| ||| Sbjct 30252 GCGCTTCATCTGCTGGCTCTGGAACCGATAGCGGAAACTACCGGCGACCCGAACTCTTAT 30193 Query 1539 GGCTTCAGGATCGAGCGATCCACGGCGGATGCAATGTCCCAGTTGTTCGTTTGCCTATCC 1598 || |||||| || || || || |||||||| | | |||| || | | || || Sbjct 30192 GGGTTCAGGCCGGAACGCTCAACTGCGGATGCCGTCGCACAGTGCTTTGGTGTGCTGTCA 30133 Query 1599 GGAAAGGCTTCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGTTTTGACCACATC 1658 |||| || || ||||| | | |||| ||||| ||||| ||||| ||| | ||| Sbjct 30132 CGAAAAGCAAACGCGGAATGGGTGTTAGAGGGCGACATTCAAGGCTGTTTCGACAATATC 30073 Query 1659 AATCATGACTGGCTACTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTG 1718 | ||||||||| | | | | | |||| |||||||| ||| | | ||||||| | Sbjct 30072 AGCCATGACTGGTTGATCGCCAACATTCCCATGGACAAGGCGATTTTGCAGAAATGGCTC 30013 Query 1719 AAGGCCGGCGTGATCCACAAAGGCCAGCT----CCAGGCAACGGATGCTGGAACACCTCA 1774 ||| || || || || ||||| || || ||| | ||||| || || Sbjct 30012 CGGGCTGGTTATGTCTACCAAAAGCAGCTATTCCCCAGCCACG----CCGGAACCCCGCA 29957 Query 1775 AGGCGGAATCATCTCGCCTACTTTGGCAAACATGGTGCTCGATGGCCTGGAATCACAGCT 1834 || || ||||| || || ||||| |||||| ||| ||||| ||||| | ||| Sbjct 29956 GGGAGGCATCATATCCCCGGGGTTGGCGAACATGACGCTGGATGGGTTGGAAGCGATGCT 29897 Query 1835 C---AAGCGA-----CACCTGGGCGTGACAAGGGCGAAGAAGCTGAAACTCAATGTGGTG 1886 ||| || || | | ||| || |||| || || | | |||||| Sbjct 29896 GGCGAAGAGATTTCCCAACGCGAAGTGGACAGCCCGAAAAA--TG---CGC---GTGGTG 29845 Query 1887 CGCTATGCGGACGACTTCGTCATCACCGGTGTCTCTCCCGAGGTACTGGAGAAAGAAGTC 1946 || ||||| || || ||| ||||||| ||| || || |||||||| |||||| Sbjct 29844 CGTTATGCAGATGATTTCATCATCACTGGTTGTTCGAAAGAATGGCTGGAGAATGAAGTC 29785 Query 1947 AAACCCTGGGTAGAGCAGTTCCTGGCGGTACGCGGGCTGCAGCTCTCTCTGGAGAAAACG 2006 | ||| || | | || ||||| | || || || ||||||| ||| ||||| Sbjct 29784 AGGCCCGCCGTGGTTGAATTTCTGGCAGAGCGTGGACTTGTCCTCTCTCCGGAAAAAACC 29725 Query 2007 CGGATCGCCCACATAGATCAGGGCTTCGACTTCCTCGGTTGGAACTTCCGCAAGTACAAC 2066 ||| | ||||||| | || |||||||||||||| |||||| | |||||||||||| Sbjct 29724 AAGATAACGCACATAGGGGACGGGTTCGACTTCCTCGGATGGAACCTGCGCAAGTACAAC 29665 Query 2067 GGGAAGCTTCTGATCAAACCCAGCCAGAAGAAC-GCGAAAGCGTTCTAC--GGCAAGGTG 2123 || ||||| |||||||| || | || |||| || | | ||||| | |||| || Sbjct 29664 GGCAAGCTCCTGATCAAGCCGTCCAAGGCGAACATCG---GGGCTCTACTTGCCAAGCTG 29608 Query 2124 AAGGAGGTCATCGAAACCAGCAGGACGGCAAGGCAAGAGGACTTGATCCGAACGCTGAAT 2183 ||| | ||| | |||| || ||| | | || | ||||||| | ||| || Sbjct 29607 CGAGAGTTGATCAAGACCAACAAAACGATACGACAGGCTAACTTGATAGGTTTGCTCAAC 29548 Query 2184 CCGATTCTGCGCGGCTGGGCGCTGTATCACCAGCCA-GTGGTTGCCAAGCAAACGTTCAG 2242 ||| |||| || ||||||||| ||||| ||| || || || |||||| | |||| Sbjct 29547 CCGGTTCTACGGGGCTGGGCGAACTATCA-CAGTCATGTCGTCGCCAAGAAGGTCTTCAA 29489 Query 2243 CCGCATGGACAACAGAGTGTTTCTCAAGCTCTGGCGTTGGGCGAAACGGCGGCACCCGAA 2302 || |||||| | ||||| | ||||||||| |||||| ||| || ||||| Sbjct 29488 CCAGGTGGACAGCGCAGTGTGGGAAATGCTCTGGCGATGGGCGGTACGTCGCCACCCTCG 29429 Query 2303 CAAGTCAC 2310 |||| ||| Sbjct 29428 CAAGACAC 29421 Score = 100 bits (110), Expect = 6e-17 Identities = 138/191 (72%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 740 CAGTCAG-GGAACGTGGTAAGCCCGTATCGCCGCCCTCGGGGCAGGGGAGCCGTAAGGCG 798 |||| || ||||||||| || |||||||||| || || ||| | |||||| | Sbjct 30870 CAGTAAGCGGAACGTGGAAATCCCGTATCGCTCCCGTCAGGGAA----AGCCGTTTGTAA 30815 Query 799 AACTGT----TGGCGGTGCGGGTATGGGATCGCAGAGAAAGCGAACGCCAGGCTGTAATC 854 || | |||||||||||| ||| || || |||||||||||| ||||||| Sbjct 30814 AAATTGCCCATGGCGGTGCGGGCGAAGGAACGAGGAAAAAGCGAACGCCGTCCTGTAATG 30755 Query 855 GTCTGGATAGGGGTTGGAACATCACCCCACGGGAAACCGGGCAGACTTCTGCGTGGTCTT 914 | ||||||| ||||| |||||||| |||| |||| ||||||||| || | |||||| Sbjct 30754 GGTTGGATAGAGGTTGAAACATCACTTCACGCGAAAGCGGGCAGACGTCCTCATGGTCTC 30695 Query 915 TCGTCGCAAGA 925 || || || || Sbjct 30694 TCTTCACACGA 30684 >seq7039 Length=691 Score = 147 bits (162), Expect = 5e-31 Identities = 105/121 (87%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 2850 CTGGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTT 2909 ||| |||||||||||||||| ||||||||||| ||||||||||||| |||||| |||| Sbjct 348 CTGAGGGCCTATAGCTCAGTTGGTTAGAGCAGGGGACTCATAATCCCTTGGTCGTAGGTT 407 Query 2910 CGAGTCCGTGTGGGCCCACCACCTTCAAAGCCGCGCACTGCGCGGCTTTCGCCTTTCTGG 2969 ||||||| ||||||||||| ||| ||||||||||| ||||||||||| | ||||||| Sbjct 408 CGAGTCCTACTGGGCCCACCATCTTGAAAGCCGCGCATTGCGCGGCTTTGTCGTTTCTGG 467 Query 2970 C 2970 | Sbjct 468 C 468 >seq54 Length=99412 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913 |||||||||||||||| |||||||||| ||||||||||| |||||| ||||| || Sbjct 54705 GGGCCTATAGCTCAGTTGGTTAGAGCACCTGACTCATAATCAGGTGGTCCCAGGTTCAAG 54646 Query 2914 TCCGTGTGGGCCCAC 2928 ||| |||||||||| Sbjct 54645 TCCTGGTGGGCCCAC 54631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104307169864212