Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq386 129 9e-25 seq385 89.7 8e-13 seq1319 86.0 1e-11 >seq386 Length=121086 Score = 129 bits (142), Expect = 9e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||||||||| || ||||| || ||| | ||||| ||||||||| || || ||| | Sbjct 3757 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 3698 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 | || || || |||| || || || | || ||| || ||||| ||||||||| Sbjct 3697 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 3638 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 ||||||||||||||||| || || |||||| || || || || ||||| || || ||| Sbjct 3637 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 3578 Query 202729 TGGGACGAATGGGC 202742 ||||| |||||||| Sbjct 3577 TGGGATGAATGGGC 3564 >seq385 Length=624889 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2710 TGTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCG 2769 |||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| Sbjct 436181 TGTAGCTCAGTTGGTTAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 436122 Query 2770 TCAGTCCTGCCA 2781 ||| || |||| Sbjct 436121 TCACTCGCGCCA 436110 >seq1319 Length=19974 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 2622 TAGGGAAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGGTTGTTGGAGGTTCGAG 2681 ||||| ||||| ||| ||||||||||| ||||||||||||||| || | |||||||| Sbjct 3681 TAGGGGAGTAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGTAGGTCGCAGGTTCGAA 3740 Query 2682 TCCTCTCTTCCCTGCCA 2698 |||| ||| |||||||| Sbjct 3741 TCCTGTCTCCCCTGCCA 3757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788243395004000