Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq3699 132 1e-26 seq1335 111 4e-20 seq2982 86.0 2e-12 >seq3699 Length=658 Score = 132 bits (146), Expect = 1e-26 Identities = 172/237 (73%), Gaps = 23/237 (10%) Strand=Plus/Plus Query 6700 TTATCTGCATCATCGTCTGTCTTTCGTGGGCTGTTAATCATTATCGTGATAACGCCATCA 6759 ||||||||||||||||||| || || ||||||||||||||||| |||||||||||||| | Sbjct 408 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 467 Query 6760 CCTACAAAGAGCAGCGCGATAAA---GCCACA----TCAATC--------------ATCG 6798 ||||||||| |||||||| ||| |||| | | || | || Sbjct 468 CCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTA 527 Query 6799 CTGATATGCAGAAGCGTCAACGAGATGTAGCAGAACTCGATGCCAGATACACAAAGGAGC 6858 |||| ||||||| ||| || || ||||| || | ||| |||| | |||||| |||||| Sbjct 528 CTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAGT 587 Query 6859 TTGCTGATGCTAACGC-GACTATCGAAACTCTCCGCGCTGATGTTTCTGCTGGGCGT 6914 | ||| |||| || || || || || |||| || | || |||| | ||||| ||| Sbjct 588 TAGCTAATGCGAAAGCTGAAAAT-GATGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 643 >seq1335 Length=14169 Score = 111 bits (122), Expect = 4e-20 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 216 GGAGCATCGCGTGGCAGAACTCGACGATGGCTACACCCGGACTGCAAATACACTGCTGGA 275 ||||| ||||||||||| ||||||||||| || || || | ||||||| ||||||| Sbjct 4080 GGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTGGA 4021 Query 276 AGCTGTCATGCTTTCTGGGCTTACTCAACATCAGCTACTGATTGTTATGGCTGTGTGGCG 335 |||||| ||||| | || | || || || ||||| ||| | | ||||||| ||| Sbjct 4020 AGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATGCG 3961 Query 336 CAAGACATACGGTTATAACaaaaaaaTAGATTGGATCGGAAATGAACAGTTCGCTGAACT 395 ||| ||||| || | ||| |||| | | |||||| | | || || || | | ||| | Sbjct 3960 CAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCAACTTTCCGAATT 3901 Query 396 CACTGGCATGGCGCCAACCAAATGTTCTACCGCCAAAAACG 436 || || || ||| | ||| |||||| | || |||| || Sbjct 3900 GACCGGGATATTGCCGAACAAGTGTTCTGCTGCAAAAAGCG 3860 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 32752 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 32811 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11410 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 11351 Query 32812 TTAC 32815 |||| Sbjct 11350 TTAC 11347 >seq2982 Length=1456 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 30653 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 30704 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133654860345348