Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq3563 125 2e-24 seq7157 113 1e-20 seq1500 111 4e-20 seq1617 98.7 3e-16 seq4209 87.8 5e-13 >seq3563 Length=1830 Score = 125 bits (138), Expect = 2e-24 Identities = 207/295 (70%), Gaps = 13/295 (4%) Strand=Plus/Minus Query 26908 GCCATTCATGCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCA 26967 ||| | |||| | || ||||||||||||||| |||| | ||| | | || ||| Sbjct 1400 GCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTC---CCA 1344 Query 26968 TTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACC 27027 | |||||| |||| |||||| ||| | |||| |||||||||||||||||||| Sbjct 1343 CTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACC 1284 Query 27028 AGCGATTTCCGCCAGCTTGCCGAAGAT-GACAACGCGGTGCCATTCCGTCTGCT----CT 27082 ||||| || || | ||||||||| || |||| | ||||||||||| || | || || Sbjct 1283 GGCGATCTCTGCAACCTTGCCGAACATCGACA-CACGGTGCCATTCGGTTTTCTCGACCT 1225 Query 27083 TTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCA 27142 | || ||| || ||| || |||||| |||| | || || | || || |||| Sbjct 1224 TCTG----GCCGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTC 1169 Query 27143 ACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCCTAAATTACCGA 27197 || ||| ||| ||||| |||||| ||||| ||||| | ||| | |||||| Sbjct 1168 ACGGCGTTACCGTTCGGCAAGTAGCGAACTTCGGGATCCTGGCCGCATGTACCGA 1114 >seq7157 Length=721 Score = 113 bits (124), Expect = 1e-20 Identities = 193/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 26906 CGGCCATTCAT---GCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCA 26962 |||||||||| | | ||| ||| || ||||||||||| | || || | | || Sbjct 74 CGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTC- 132 Query 26963 GTCCATTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTAT 27022 ||| | ||||| || ||| |||||| | | | || ||| ||||| ||||| || Sbjct 133 --CCACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATAC 190 Query 27023 TCACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCT 27082 ||||| |||||||| || | ||||||||||| || ||||||||||| || || |||| Sbjct 191 TCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCC 250 Query 27083 TTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCA 27142 | | | ||| || |||||||||||| ||||| | ||||| | | | | || | Sbjct 251 TGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTT 310 Query 27143 ACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATCG 27181 || ||| || ||| ||||||| ||||| || ||| Sbjct 311 ACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCG 349 >seq1500 Length=48209 Score = 111 bits (122), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 26970 TACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAG 27029 ||||||| || || || || ||| | |||| ||| |||||||| |||||||||| Sbjct 46623 TACGGGTACGGAGTTGCCCCTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCACCAG 46682 Query 27030 CGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTT 27089 | | |||||| ||||||||||| | || ||||||||||||||||||||||| | Sbjct 46683 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGCCATTCCGTCTGCTCCCGCATCT 46742 Query 27090 CGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTG-AGATTGGCAACTGCG 27148 | || || || || ||| |||| | |||||| | ||| || || || |||||| Sbjct 46743 CCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCCA-CCTGCAGGTTTGCCACTGCG 46801 Query 27149 CCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCC 27186 || || || ||||| || ||||| ||||| ||||| Sbjct 46802 CCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCC 46839 >seq1617 Length=5386 Score = 98.7 bits (108), Expect = 3e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 26970 TACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAG 27029 ||||||| || || ||||| ||| | |||| ||| |||||||| ||||| |||| Sbjct 4728 TACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAG 4787 Query 27030 CGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTT 27089 | | |||||| ||||||||||| | || ||||| |||||||| |||||||| | Sbjct 4788 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCT 4847 Query 27090 CGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTG-AGATTGGCAACTGCG 27148 | ||||| || || ||| |||| | ||||| | ||| || || || |||||| Sbjct 4848 CCCCTGTCTGTTTGTCACGCCAGGTTTCCGACGTGGCGA-CCTGCAGGTTTGCCACTGCG 4906 Query 27149 CCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCC 27186 || || || ||||| || ||||| ||||| || || Sbjct 4907 CCCCCGTTGGGGATGTAACGGACTTCCGGATCTTTTCC 4944 >seq4209 Length=1822 Score = 87.8 bits (96), Expect = 5e-13 Identities = 190/282 (67%), Gaps = 7/282 (2%) Strand=Plus/Plus Query 26901 GCATACGGCCATTCATGCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGAT 26960 |||| | ||| | |||| | ||| | ||||| |||||||| || | | || | | | Sbjct 341 GCATTCTGCCCTGCATGTCGACGATAATTTCGGTGGTGTACCGTTTGATACCGTCTTTTT 400 Query 26961 CAGTCCATTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGT 27020 | ||| | || ||| | || ||||| ||| | |||| ||||| ||||| | Sbjct 401 C---CCACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGAT 457 Query 27021 ATTCACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCT 27080 | |||||||||||||| || | || || || | ||| ||||||||||| |||| | Sbjct 458 ACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTT 517 Query 27081 C--TTTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATT 27138 | ||| || | | || ||| || |||||| || |||| |||| ||||||||| Sbjct 518 CGACTTTCTGTCCCGTTTG--CTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGATT 575 Query 27139 GGCAACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATC 27180 || ||||| ||| ||| | |||||| ||||||||| Sbjct 576 GGTTACTGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATC 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134003628145440