Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq3178 430 5e-116 >seq3178 Length=10189 Score = 430 bits (476), Expect = 5e-116 Identities = 875/1286 (68%), Gaps = 45/1286 (3%) Strand=Plus/Plus Query 2311 GCAAGATCATTCTAGAACGCCAGATGGCGCGCTGGTATCAGCTGAAGGACCACGAGGTTC 2370 |||| | || || || ||||| || | |||||||| | |||||||| ||| ||| | Sbjct 1779 GCAACCTGATGCTTGATCGCCAACTGTCCCGCTGGTACCCACTGAAGGATCACCCGGTGC 1838 Query 2371 AGCTTCGACTGTTGCGTGCCGTTGAAGACGGTGTGCGCTTCCCCATTGTGCCCGCAGGAC 2430 | || ||| || || || || || | ||||| || | ||||||||||| | Sbjct 1839 AACTCGCCCTGGTGGCAGCGGTGTCGGAAGGAATTCGCTTTCCACTGGTGCCCGCAGGCC 1898 Query 2431 GACGCTCAGGCAAGACGGAACGCGCCAAGCGTTTTCTG-TCACGTCAGGCGATGTGGTAT 2489 | || || ||||| || || |||||| || || | | | ||||| | ||| Sbjct 1899 GTCGTAGCGGAAAGACTGAGCGGTTCAAGCGCTTCGTGGTGAAG-CAGGCATCGGCGTAC 1957 Query 2490 CCGGGCGAGAAGTATTTCGCAGCCGCGCCCACGTACAACCAGGCCAAGAAGATCTGGTGG 2549 ||| | ||| ||||| || || || ||| || |||||| ||||| |||| ||| Sbjct 1958 AGCGGC---ATGTACTTCGCCGCGGCACCAACGCACGCCCAGGCGAAGAAAATCTTCTGG 2014 Query 2550 GACGACCTCAAGGCGCTGACGCTGTCGTGTATGCACCCCAAGAAGCC--CAG--CGAGTC 2605 || ||||||||||| | ||||| | || |||||| || ||| | | |||||| Sbjct 2015 GATGACCTCAAGGCTTTCACGCTCTGCTGCATGCAC----AGTCGCCGGCCGTCCGAGTC 2070 Query 2606 CGAACTCAAGATCTACCTGCCCAACGGGACCGAGATTCACATCATCGGTCTGGACCAGGA 2665 || || | ||||||||| |||||| | |||||| ||| ||||||| || ||| || Sbjct 2071 GGACCTGATCATCTACCTGGACAACGGTAGCGAGATCCACGTCATCGGGCTCGACAAG-- 2128 Query 2666 CCAGCCCCAGCGGATTGAAGGTATCAACTGGACAGGCGGTGTGATCGACGAAATTGCGGA 2725 || ||||||||||| ||||| |||||| ||||| | || |||||| | || || Sbjct 2129 ----CCGCAGCGGATTGAGGGTATACCCTGGACTGGCGGGGGCATTGACGAATTCGCCGA 2184 Query 2726 CGTGAAGGGTGAGGCGCTGCAAGCGAACATCATGCCCGCGCTCAACACCGTGAATCCGAC 2785 | | ||| || || | | || ||||| | || ||||| ||||| || || || || Sbjct 2185 CATTAAGCCGGACGCATGGGAGGCAAACATTCTCCCGGCGCTGAACACTGTCAACCCAAC 2244 Query 2786 GCGCCCGTACTATCGGGCCTGGTGCTGGTTCATTGGTGTGCCCGACGGTCTGAACCACTA 2845 ||| | || ||||||||||||||||| | || || || ||||| |||||||||| Sbjct 2245 CATGCCGGATTACCGGGCCTGGTGCTGGTTGCTCGGCGTACCTGACGGCTTGAACCACTA 2304 Query 2846 TTACGACATG-GCGGAATATGCACGC----ACCGCCAACGACCCCGACTGGGCGCTGTTC 2900 |||||| || || ||||| || | | ||| ||||| ||| | ||||| Sbjct 2305 CTACGACCTGTGC-----ATGCAGGCCGAATCAGGCAATGACCCAAACTTCCGGGTGTTC 2359 Query 2901 CACTGGACGTCGGAAGAGATTCTCCCGCCAGACGTCATTGAAGCTGCGAAGCGCACCATG 2960 || |||| |||| |||||||| ||| | ||||| || || || |||||| ||||| Sbjct 2360 CATTGGAAATCGGCCGAGATTCTTCCGGCTGACGTAATGGACGCAATGAAGCGGGCCATG 2419 Query 2961 TCGCGGAAGCAGTACAATCAGGAATATCGAGCGAGCTTCGAGACCGCCAGCGGTCGTATC 3020 ||| ||||||| ||| ||||||| | ||| ||||| || || || || ||| Sbjct 2420 TCGGCCAAGCAGTTCAAGCAGGAATTTGAAGCATCGTTCGAAACGGCGTCTGGCCGGATC 2479 Query 3021 TATGAGGACTACTCGAAAGAGAATTTCACAACCGA-GCGG--ATCCTCCCTCACGAAGCG 3077 || ||||||||| |||| ||| ||| ||||| || | || || || || | Sbjct 2480 TACGAGGACTACAGCAAAGCGAA---CACCACCGATGCAGCCATTGAGCCGCATGAGCAG 2536 Query 3078 CTGCACTGGACGCACGACCAGAACTTCACCCCGCTGAGCTCGGCTATTGTGGTCATCCGC 3137 ||| |||| ||||||||||||||| || || ||| || || || | ||| ||| Sbjct 2537 CTGATGTGGATGCACGACCAGAACTTTACGCCTCTGTCATCTGCGATCGGTGTCCGGCGC 2596 Query 3138 A---ATGG---AGTCCCCTTCTTCCTCGATGAGATCGTTCTTGAGAGCGCAGTGAGCCGG 3191 | |||| || || || | || ||||||||||| || ||||| || | Sbjct 2597 AACGATGGCAAAGACCTCTATCTGCTGGATGAGATCGTGCTGATCAGCGCTGTTTCGAAG 2656 Query 3192 CAGTCGGCAATCGAGTTCGTTGAGAAGTACAAGGAACACAAGAACAAGACAGTCTATATC 3251 |||||||| |||||||| || |||| ||||| ||||| |||||| ||| ||| Sbjct 2657 CAGTCGGCTGCTGAGTTCGTGGACAAGTTTAAGGATCACAAAAACAAGCACGTCCTGATC 2716 Query 3252 TACGGTGACCCAGCGGGTCGCGCGGGTGAGAAGCACGGGCACAAATCCGATTACACTGAG 3311 ||||| ||||| ||||| || || ||||||||||||||| |||||| ||||| || Sbjct 2717 TACGGCGACCCGGCGGGCAAGGCTGGCGAGAAGCACGGGCACGCATCCGACTACACCGAC 2776 Query 3312 ATCGAAGACGTGCT--ACGCTTGCACGGCTGGAAGTTCGAGCGGCGCGTGCGTCCTGCGC 3369 || || | |||| | | ||| | ||||||| || | ||| || || |||| Sbjct 2777 ATTGAGGGCGTGTTGAAGGCT--AATGGCTGGACGTACACGCGCAAGGTCAAGCCGGCGC 2834 Query 3370 ACCCTGCTATCAAGGACCGCCAGAACGCTGTACGTGCGATGATCTGCAATGCGAAAGGCG 3429 | || | || ||||| || |||||||| || || |||| |||| || || ||||| Sbjct 2835 ATCCATCCATAAAGGATCGGCAGAACGCCGTCCGGGCGAAGATCCTCACCGCCTCAGGCG 2894 Query 3430 AAGTGAGGTTGAAGGTGAATCCTCAGACTGCGCTGTGGTGCCACAAAGGCTTGAGCACTG 3489 || || || | || ||| || || | ||||| ||||| || ||||| || | Sbjct 2895 AAACCAGCCTGTTCATCAACCCTGTCACCGCTCCCTGGTGTCACAAGGGGTTGAGTACGG 2954 Query 3490 TGCAGCTCCAGGCAGGTTCGTCTTTCCAAGAGGATCAAAAGAACCAGTATCAGCACATCA 3549 | ||||| || || ||| | |||||||| || || || ||| | || |||||||||| Sbjct 2955 TTCAGCTTCAAATGGGCTCGACCTTCCAAGAAGACCAGAAAAACGACTACCAGCACATCA 3014 Query 3550 CCACAGCGATCGGGTATTTTATTGAC 3575 |||| |||||||| |||| || ||| Sbjct 3015 CCACGGCGATCGGCTATTGCATCGAC 3040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187272310126464