Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq386 131 1e-25 seq1979 102 5e-17 >seq386 Length=121086 Score = 131 bits (144), Expect = 1e-25 Identities = 342/505 (68%), Gaps = 30/505 (6%) Strand=Plus/Minus Query 948 ACGAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCG 1007 |||| || ||||||||||| | ||||| |||||| | ||||| || ||||||| Sbjct 3645 ACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCG 3586 Query 1008 TCACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGC 1067 | || |||||||| || |||||||||| ||| | ||||| || ||||| ||| | Sbjct 3585 TGACGATCTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATC 3526 Query 1068 AGTGGCGGCACTGGCATGT---CGA-GGACGGAGGATCG-TCGTGGATTGACCAGATCTC 1122 ||||||| ||||| || ||| || ||| |||| || ||||| | ||||| Sbjct 3525 AGTGGCGCTCCTGGCCTGCGCCCGACGGCCGGCATATCGATCA--GATTG--CGAATCTC 3470 Query 1123 GGCCGCCGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATG 1182 | | | || || | |||| | ||||| || | || |||||||| Sbjct 3469 GTCAGT------GCGATAAAGCAAAATCCCT-ATTCGCGGCGTCTGATCGTTTCCGCATG 3417 Query 1183 GAA--CGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTG 1240 ||| || || | | || || ||||| || | || |||||| | |||||||| | Sbjct 3416 GAATCCGGCGCT--CGTCGATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTC 3359 Query 1241 TACGTCGTCGACGGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCT 1299 ||||| | |||||| ||| || |||| || ||||||||||| ||| || || || || Sbjct 3358 TACGTGGCCGACGGAAAGCTTTC-CTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCT 3300 Query 1300 CGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGC 1359 ||| ||||||||||||||||| || || || || || | | |||| | |||||| | Sbjct 3299 CGGCGTGCCGTTCAATATCGCATCCTATGCCCTGCTGACCCTCATGGTGGCGCAGGTCAC 3240 Query 1360 CGGCCTGCGGGTGGGTGAGCT-GATCTGGACCGGC--GGCGACTGC-CACATCTACAACA 1415 || |||| | |||||| | | || || || ||||| ||| || |||| || Sbjct 3239 GGGTCTGCAGCCGGGTGATTTCGTTC---ACACGCTGGGCGA-TGCGCATCTCTATGCCA 3184 Query 1416 ACCACGTCGACCAGGCGCTGATGCA 1440 |||| |||| ||||||| | |||| Sbjct 3183 ACCATTTCGAGCAGGCGCGGCTGCA 3159 >seq1979 Length=9990 Score = 102 bits (112), Expect = 5e-17 Identities = 186/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 830 AAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGAC 889 |||| || ||||||||||||||||| | | ||| | | ||| | ||| | | Sbjct 9091 AAGGGCGACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGC 9150 Query 890 CTCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTAC 949 | |||| |||||||||||| | ||||| ||| | ||||||||| | || | Sbjct 9151 TTGGCCGACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAAT 9210 Query 950 GAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTC 1009 ||| | | ||| | | |||||| |||| ||| | ||| ||| ||||| || ||||| Sbjct 9211 GAATTGATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTG 9270 Query 1010 ACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAG 1069 ||||||||||| |||||| || | ||| |||| || || || ||||||| |||| Sbjct 9271 CGTATCTGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAG 9330 Query 1070 TGG-CGGCACTGGCATGTCGAGGACGGAGG 1098 ||| | || ||||| | ||||||| || Sbjct 9331 TGGACCGC-CTGGCCCACCAAGGACGGCGG 9359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296103142864374