Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq3281 138 2e-27 seq386 113 7e-20 seq1319 100 4e-16 seq1979 87.8 3e-12 >seq3281 Length=2714 Score = 138 bits (152), Expect = 2e-27 Identities = 180/248 (73%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 201841 AAAAGC-CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTA 201899 |||||| |||| | || || || |||||| || | |||| || | |||||| | || | Sbjct 1647 AAAAGCACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCA 1706 Query 201900 ACTTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCC 201959 || | || ||||| ||||| ||||||||||||||||| |||| | || || |||| Sbjct 1707 ACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCC 1766 Query 201960 ATGAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACG 202019 | || ||| | ||||| | | || |||||||| || || |||||| ||||| | Sbjct 1767 ACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATG 1826 Query 202020 TCACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGC 202079 | | |||||||| || ||||| ||| ||||||||||| | ||||| || || || | Sbjct 1827 TAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCAC 1886 Query 202080 AATGGCGT 202087 |||||||| Sbjct 1887 AATGGCGT 1894 >seq386 Length=121086 Score = 113 bits (124), Expect = 7e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||||||||| || ||||| | || |||||||| ||||||||| || | | Sbjct 3758 CGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTC 3699 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 | |||||||| | || ||||| || | || || || |||||||| ||||| Sbjct 3698 GGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 3639 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 |||||||||||| | || || || |||||| ||| | || || ||| ||| || || Sbjct 3638 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 3579 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 |||||| |||||||| || | ||||| || | || ||||| || || | || ||||| Sbjct 3578 CTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 3519 >seq1319 Length=19974 Score = 100 bits (110), Expect = 4e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 614 GGGGAGTAGTTCAACTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGCAGGTTCGAGTC 673 ||||||||| ||| |||||||||| ||||||||||||||| | || |||||||||| || Sbjct 3683 GGGGAGTAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGTAGGTCGCAGGTTCGAATC 3742 Query 674 CTGTCTCCCCTGCCA 688 ||||||||||||||| Sbjct 3743 CTGTCTCCCCTGCCA 3757 >seq1979 Length=9990 Score = 87.8 bits (96), Expect = 3e-12 Identities = 202/299 (68%), Gaps = 8/299 (3%) Strand=Plus/Plus Query 201790 CATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGC-CG 201848 |||||| |||||||| || ||||| ||||| || || | || || ||| || Sbjct 9039 CATGAAGCAATATCTCGAACTACTGAACGATGT-CGTGACCAATGGCCTGACCAAGGGCG 9097 Query 201849 ACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAG 201908 |||| ||||| || |||||| | || || | || ||| | || || ||| | Sbjct 9098 ACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGCTTGGCCG 9157 Query 201909 AAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCC---ATGAGC 201965 | || || |||||| | |||||||| ||| ||||| ||| || |||| |||| Sbjct 9158 ACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCAC-TTCAA--AAGCATCGCCAATGAAT 9214 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025 || | ||| | | | || ||||||||||| ||| |||| || || ||| | Sbjct 9215 TGATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTA 9274 Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGG 202084 |||||||||||||||| || |||| ||| | |||||||||||||| |||| ||| Sbjct 9275 TCTGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 9333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787926625789040