Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq386 93.3 7e-14 seq1319 89.7 8e-13 >seq386 Length=121086 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 200098 GACCGTACCGGTANNNNNACCACGT-CTATTTTCGGTGCACAGATGCGCTTCAATCTACA 200156 ||||||||||| | || |||| | ||||||| |||||||| ||| |||| Sbjct 3757 GACCGTACCGGGACAGGCAC-ACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTC 3699 Query 200157 AGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAGCT 200216 | || || || ||||||||||||| |||||| |||||||| |||||||| Sbjct 3698 GGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 3639 Query 200217 GTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCAT 200276 | |||||||||| || || || || || ||| ||||| || || ||| || || || Sbjct 3638 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 3579 Query 200277 TTGGGACGAATGGGC 200291 ||||| |||||||| Sbjct 3578 CTGGGATGAATGGGC 3564 >seq1319 Length=19974 Score = 89.7 bits (98), Expect = 8e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 976 TAGGGAAGTAGCTCAGCAGGCAGAGCGCTGGTCTCCAAAACCAGATGTCGCAGGTTCGAT 1035 ||||| |||||||||| || |||||| ||||||||||||| | ||||||||||||| Sbjct 3681 TAGGGGAGTAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGTAGGTCGCAGGTTCGAA 3740 Query 1036 TCCTGTCTTCCCTGCCA 1052 |||||||| |||||||| Sbjct 3741 TCCTGTCTCCCCTGCCA 3757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783283876992000