Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq3281 161 2e-34 seq386 141 1e-28 seq6155 100 4e-16 seq1979 95.1 2e-14 >seq3281 Length=2714 Score = 161 bits (178), Expect = 2e-34 Identities = 222/308 (72%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 196010 GCTGATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGC 196069 || ||||||||| || || || || ||||| |||| || || | || || ||||| Sbjct 1594 GCAGATGAAACAATACTTAGATTTAATGCAGCTCGTGCTGGACCAGGGA-ACACAAAAGC 1652 Query 196070 T-GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGC 196128 ||| | || || || ||||||||| |||||| || |||||||| | || |||| | Sbjct 1653 ACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCC 1712 Query 196129 GCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAAC 196188 |||| || || ||||||||||||||||| | || | ||| || |||||||||| Sbjct 1713 AGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAAC 1772 Query 196189 TGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTA 196248 || | ||||| | | || |||||||| || || ||||||| ||||| || | | Sbjct 1773 TGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGA 1832 Query 196249 TCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGC 196308 |||||||||||||||| |||||| | || || || ||||| || || || || |||| Sbjct 1833 TCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGC 1892 Query 196309 GTGCATGG 196316 || ||||| Sbjct 1893 GTTCATGG 1900 >seq386 Length=121086 Score = 141 bits (156), Expect = 1e-28 Identities = 177/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTG-CG 196129 ||||||||||| || ||||| || ||||||| || |||||||| || || ||| || Sbjct 3757 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 3698 Query 196130 CAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 | |||| || | || ||||| || |||| || ||| ||||||||||| || Sbjct 3697 GCGGGTTTTCCTGCCC-TGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 3639 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 | ||||||||||||| ||||| || |||||| ||||| || || ||| ||| | || Sbjct 3638 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 3579 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||||||| ||||| || || | |||||||| || || ||||| || | |||||||| Sbjct 3578 CTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 3519 Score = 93.3 bits (102), Expect = 7e-14 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 || ||||| ||||| ||||||||| || || |||| ||||| || |||||||| ||| Sbjct 3340 CTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATC 3281 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAA---TATGGTGGCGGGT 196865 || || || || ||| || | ||||||||| |||||||| | || | ||||| Sbjct 3280 GCATCCTATGCCCTGCTGACCCTCATGGTGGC---GCAGGTCACGGGTCTGCAGCCGGGT 3224 Query 196866 GATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGC 196921 |||||||| ||| |||||| | ||||| || | |||||| | || ||||| Sbjct 3223 GATTTCGTTCACACGCTGGGCGATGCGCATCTCTATGCCAACCATTTCGAGCAGGC 3168 >seq6155 Length=618 Score = 100 bits (110), Expect = 4e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 579 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 520 Query 5547 TGCCAGAGTCGCCACATTTT 5566 | ||||| |||| ||||| Sbjct 519 AGTCAGAGGAGCCAAATTTT 500 >seq1979 Length=9990 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| ||||||| | | || | |||| | || | | || | Sbjct 9097 GACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGCTTGGCC 9156 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 | || ||||||||| | |||||||| ||| | ||| | | ||| | | ||| || Sbjct 9157 GACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAATGAATTG 9216 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 | ||| | ||| ||| ||||||||||| ||| ||||| || || ||| ||||| Sbjct 9217 ATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTATC 9276 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGG 196307 ||||| || ||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct 9277 TGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 9333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770232345397840