Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq3281 127 8e-25 seq2 87.8 7e-13 >seq3281 Length=2714 Score = 127 bits (140), Expect = 8e-25 Identities = 225/324 (69%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 51924 ATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGG 51983 || ||||| || ||||| |||||||| ||| ||||||| ||||| ||||| || ||| Sbjct 1832 ATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGG 1891 Query 51984 CGTAGTTGGG---ATGCTGGTGGCGGCAAGGTCATCGATCAGATC-CATGAAGTCGTCAA 52039 ||| ||| | | | |||||| | ||| || ||||| || || | ||| Sbjct 1892 CGTTCATGGCCAAAACCAGATGGCGGGCA---CATTGACCAGATTACACAAATTATACAA 1948 Query 52040 ATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGA 52099 | | || || ||| |||| ||| || || ||||| ||||| |||||||||| || Sbjct 1949 A-CTATAAAAAACAATCCCGATTCCAGAAGGATTATTGTGTCTGCCTGGAATGTGGCAGA 2007 Query 52100 TTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGG 52159 | || ||||||| | | ||||||||| | | ||||| || ||||||||||| || Sbjct 2008 GATAGAACATATGGCACTTCCACCCTGCCATGCCTTTTTCCAGTTTTATGTAGCTGACGG 2067 Query 52160 TAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAA 52219 || || || || | |||||||| ||| || || || |||| || || ||||| Sbjct 2068 AAAACTGAGCTGTCAGCTTTATCAGCGAAGTGCAGATATTTTTCTGGGGGTACCTTTTAA 2127 Query 52220 CATTGCCAGCTATTCCTTGCTGAC 52243 ||||||| |||| |||| ||||| Sbjct 2128 CATTGCCTCCTATGCCTTACTGAC 2151 >seq2 Length=124989 Score = 87.8 bits (96), Expect = 7e-13 Identities = 260/401 (65%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 51825 ACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTGCTGTGGTTGCTTTCGGGC 51884 |||||||| ||| ||||| | ||| | || || |||||||||| | ||| Sbjct 93411 ACCACCAAAAAGCTGCATACCAAATCGATCGTTCATGAACTGCTGTGGTTTTTACAAGGC 93352 Query 51885 TCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTGGGACGAATGGGCGGAT 51944 ||||||| | | ||| | || | || || | || ||||| || ||||| ||| Sbjct 93351 AATACGAACATTGCTTACCTCAACCAGCATGGGGTAACTATCTGGGATGAGTGGGCTGAT 93292 Query 51945 GAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAGTTGGGATGCTGGTGGC 52004 || | || || | || ||||| ||||| ||| ||| | || ||| | ||| | Sbjct 93291 AAACAAGGGAATTTAGGACCTGTTTATGGATCGCAATGGAGAAGCTGGCCTACTGCCAAC 93232 Query 52005 GGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCAATTAAGAACGATCCTGATAGT 52064 || | ||||||||| || |||| || || |||||| | |||||||| Sbjct 93231 GGAGATACCATCGATCAAATATCACAAGTGATCCAACAAATTAAAGAAAATCCTGATTCG 93172 Query 52065 CGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCC 52124 || || | ||| |||||||||||| || | | | |||||| | |||| Sbjct 93171 CGGAGGTTGCTCGTCAGTGCTTGGAATGTAGGCATTATACCACAAATGGCGCTTCCTCCT 93112 Query 52125 TGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAG 52184 |||||| ||| || ||||| |||||||| | |||||||| ||||| | ||||| Sbjct 93111 TGCCATGTACTTTTTCAATTTTATGTAGCCAATCACAAGCTTTCTTGCCAACTTTATCAA 93052 Query 52185 CGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGC 52225 || ||||| | || ||||| || || |||||||| || Sbjct 93051 CGCAGCGCCGATGTATTTTTGGGAGTGCCTTTTAACATCGC 93011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190078451050140