Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq982 143 6e-29 seq322 134 3e-26 seq540 129 1e-24 seq391 125 2e-23 >seq982 Length=41121 Score = 143 bits (158), Expect = 6e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||||||||| | ||| ||||| || ||||||||||||||||| |||| |||||| Sbjct 2602 CTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTA 2661 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||||| ||| |||||||| ||||| || || || || | | ||| ||| Sbjct 2662 CGACCATCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCAGGTGGGATACCT 2721 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||||||| || |||||| | || | | |||| |||| || ||||| | Sbjct 2722 TCTTTGTCTTGAATCTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCCAAG 2781 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || || | ||||| || || | ||||| || Sbjct 2782 GTGATTGTTTTACCGGTCAAGGTCTTTACAAAAATTTGCATGTT 2825 Score = 127 bits (140), Expect = 5e-24 Identities = 171/237 (72%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||||||||| | ||| |||||||| |||||||||||||||||||| | | || Sbjct 1918 CTAAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAGAGGGTA 1977 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| | ||| || ||||| ||||| || || || || | | ||| ||| Sbjct 1978 CGACCATCTTCCAATTGTTTACCAGCGAAAATAAGTCTTTGTTGATCGGGTGGGATACCT 2037 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| || || ||||| | || | | ||||||||| ||||| || | Sbjct 2038 TCTTTGTCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCTGAACCTTCTACCTCTAAG 2097 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCTA 152119 || |||||||| || || | ||||| || || | ||||| ||| |||| |||| Sbjct 2098 GTGATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCATACCACCTCTTAATCTA 2154 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||| || || || || |||||||||||||| |||| |||||| | || Sbjct 2151 TCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGATAAAGTACGACC 2210 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| | ||| ||||| |||||||| || || ||||| | | ||| ||||| || Sbjct 2211 ATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTT 2270 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| || || ||||| | || | | |||| |||| || ||||| | || || Sbjct 2271 GTCTTGGATCTTGGTCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCCAAGGTGAT 2330 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | ||||| || |||| ||||| Sbjct 2331 TGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 2366 >seq322 Length=112280 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||||||||| | ||| ||||| || ||||||||||||||||| |||| |||||| | Sbjct 11451 GAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGATAAAGTACG 11392 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | ||| || || || ||||| || || || || | | ||| ||||| Sbjct 11391 ACCATCTTCCAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTC 11332 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||| ||||| ||| || | || | | |||| |||| || ||||| | || Sbjct 11331 TTTGTCTTGGATTTTGGTTTTAACGTTTTCGATGGTGTCAGAACCTTCAACTTCTAAGGT 11272 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| || || | ||||| || || | ||||| Sbjct 11271 AATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCAT 11233 Score = 125 bits (138), Expect = 2e-23 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | |||||| ||||| ||||||||||||||||| || | | ||| | ||||| Sbjct 11217 GAGTACTAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACCATC 11158 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||||| ||| || || || ||||| || || ||||| | | ||| ||||| || || Sbjct 11157 TTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGGTCGGGTGGGATACCTTCTTTGTC 11098 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| ||||| |||||| | || | | | || |||| || ||||| | |||||||| Sbjct 11097 TTGGATTTTGGTCTTGACATTTTCAATGGTATCAGAACCTTCAACTTCTAAGGTAATAGT 11038 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || | ||||| || |||| |||||| Sbjct 11037 TTTACCGGTCAAGGTCTTTACAAAGATTTGCATT 11004 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||||||| || | ||| |||||||| ||||||||||||||||| || | | || Sbjct 11681 CTAAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTA 11622 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||||| ||| || || || || || || || ||||| | | ||| ||| Sbjct 11621 CGACCGTCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGGTCGGGTGGGATACCT 11562 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| || || || ||| |||| | | | || |||| || ||||| | Sbjct 11561 TCTTTGTCTTGGATCTTGGTCTTTACATTCTCAATGGTATCAGAACCTTCAACTTCTAAG 11502 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| || || | ||||| || |||| ||||| Sbjct 11501 GTAATAGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11461 Score = 113 bits (124), Expect = 1e-19 Identities = 168/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||||||||| | ||| ||||| || ||||||||||||||||| || | | || Sbjct 12137 CTAAGTCTGAGGACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGGGTA 12078 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| | || || || || ||||| || || || || | | ||| ||| Sbjct 12077 CGACCATCTTCCAATTGCTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCT 12018 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || |||||| | || | | |||| || | || ||||| | Sbjct 12017 TCCTTATCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGAGCCTTCAACTTCTAAG 11958 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCTA 152119 ||||||||||| || || | ||||| || || | ||||| ||| |||| |||| Sbjct 11957 GTAATAGTTTTACCGGTCAAGGTCTTGACAAAAATTTGCATACCACCTCTTAATCTA 11901 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||| || || || ||||||||||||||||| || | | ||| | || Sbjct 11904 TCTAAGTACCAAATGGAGTGTTGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTACGACC 11845 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| ||| || || || || || || || || || | | ||| ||||| || Sbjct 11844 ATCTTCTAATTGTTTACCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTT 11785 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| ||||| ||||| | || | | | || |||| |||||||| | || || Sbjct 11784 GTCTTGGATTTTGGTCTTGACGTTTTCAATGGTATCAGAACCTTCTACTTCCAAGGTGAT 11725 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | ||||| || |||| ||||| Sbjct 11724 TGTTTTACCGGTCAAGGTCTTTACAAAGATTTGCAT 11689 >seq540 Length=89862 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||||||||| || | ||| ||||| || || ||||||||||| ||||| | | || Sbjct 84307 CTGAGTCTGAGAACTAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTA 84248 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| | ||| ||||| |||||||| || || ||||| | | ||| ||| Sbjct 84247 CGGCCATCTTCCAATTGTTTACCGGCAAAGATAAGTCTTTGTTGGTCGGGTGGGATACCT 84188 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| ||||| |||||| | || | | |||| |||| || ||||| | Sbjct 84187 TCTTTATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAAT 84128 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || | ||||| || |||| ||||| Sbjct 84127 GTGATAGTTTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 84087 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||| || || || || ||||||||||| ||||| | | || | || Sbjct 83846 TCTAAGTACCAAATGGAGGGTTGATTCCTTTTGGATGTTATAATCAGAGAGGGTACGACC 83787 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| | ||| ||||| ||||| || || || ||||| | | ||| ||||| || Sbjct 83786 ATCTTCCAATTGTTTACCGGCAAAGATTAGTCTTTGTTGGTCGGGTGGGATACCTTCTTT 83727 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| ||||| |||||| | || | | |||| |||| || ||||| | || || Sbjct 83726 ATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGAT 83667 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 |||||| || || | |||||| || || | ||||||||| Sbjct 83666 AGTTTTTCCGGTTAAAGTCTTTACAAAAATTTGCATTTTA 83627 Score = 104 bits (114), Expect = 5e-17 Identities = 166/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||||||||| | |||||| || || |||||||||||||| ||||| | | || Sbjct 84079 CTAAGTCTGAGGACTAAATGAAGGGTTGATTCTTTTTGGATGTTATAATCAGAGAGGGTA 84020 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| | ||| ||||| || ||||| || || || || | | ||| ||| Sbjct 84019 CGACCATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCT 83960 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| || || ||||| | || | | |||| || | ||| ||||| | Sbjct 83959 TCTTTATCTTGGATCTTGGTCTTGACGTTTTCAATGGTGTCAGAGCCCTCAACTTCTAAT 83900 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCTA 152119 || || ||||| || || | || || || || | ||||| ||| |||| |||| Sbjct 83899 GTGATTGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCATACCACCTCTTAATCTA 83843 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || ||||| || || || |||||||||||||||||||| | | || | || Sbjct 84530 TCTAAGAACGAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAGAGGGTACGACC 84471 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| | ||| ||||| || ||||| || || || || | | ||| ||||| || Sbjct 84470 ATCTTCCAATTGTTTACCGGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCTTT 84411 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| ||||| |||||| | || | | |||| |||| || ||||| | || || Sbjct 84410 ATCTTGGATTTTGGTCTTGACATTTTCAATGGTGTCAGAACCTTCAACTTCTAATGTGAT 84351 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | || || || || | ||||| Sbjct 84350 GGTTTTACCGGTCAAGGTTTTAACAAAAATTTGCAT 84315 >seq391 Length=66319 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||||||| || | ||| || || || || ||||||||||||||||| |||||| | Sbjct 37218 GAGTCTGAGAACTAAATGGAGGGTTGATTCCTTTTGGATGTTGTAATCTTGTAAAGTACG 37277 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||||| ||| || || |||||||| || || || || | | ||| ||||| Sbjct 37278 ACCATCTTCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTC 37337 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||| ||||| ||||| | || | | ||||||| | ||||||||| ||||| Sbjct 37338 TTTGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATCCCTCTACTTCGAGAGT 37397 Query 152066 AATAGTTTTGCC 152077 ||| || || || Sbjct 37398 AATCGTCTTACC 37409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153705874400354