Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq385 93.3 5e-14 seq1857 91.5 2e-13 seq2022 87.8 2e-12 seq154 84.2 3e-11 >seq385 Length=624889 Score = 93.3 bits (102), Expect = 5e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 157426 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 ||||||||||||||||||||| | ||||||||||| | |||||||||||||||||||||| Sbjct 544465 GTAGCTCAGCTGGATAGAGCACCGGCCTTCTAAGCCGACGGTCGCTGGTTCGAATCCAGC 544406 Query 157486 C 157486 | Sbjct 544405 C 544405 Score = 84.2 bits (92), Expect = 3e-11 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 158115 TATGGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCG-AAGTGAGAG- 158172 || ||| ||||| |||| |||| | ||| | ||||||||||||| ||| | ||||||| Sbjct 106311 TAAGGAGGGGTGGCCGAGCGGTTTAAGGCACCGGTCTTGAAAACCGGCGTAGGTGAGAGC 106370 Query 158173 CTTCCGTGGGTTCGAATCCCACCCTTTCCG 158202 || ||||||||||||||||||||| |||| Sbjct 106371 CTACCGTGGGTTCGAATCCCACCCCCTCCG 106400 >seq1857 Length=1661 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 791 AGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGA 732 Query 17917 GTCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 731 CTCCGTTATTCTCCA 717 >seq2022 Length=5126 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 ||||| |||||||||| ||| |||||||| ||| | ||| ||| || ||||||||||||| Sbjct 4309 AGGGGGATTAGCTCAGCTGGCTAGAGCGCTTGCCTGGCAGGCAAGAGGTCAGCGGTTCGA 4250 Query 17917 GTCCGCTATTCTCCA 17931 |||||||||||||| Sbjct 4249 CTCCGCTATTCTCCA 4235 >seq154 Length=6905 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 16154 GGTGGTGGAATTGGTAGACACCCCAGACTTAAAATCTGTTGAGCGTATGCTCGTGCGGGT 16213 ||||||||||||||||||||| | ||||||||||||| || || | || ||||||||| Sbjct 1401 GGTGGTGGAATTGGTAGACACGCAAGACTTAAAATCTTGTGGGCATTTGTCCGTGCGGGT 1342 Query 16214 TCAAGTCCCGC 16224 || |||||||| Sbjct 1341 TCGAGTCCCGC 1331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596249253847840