Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq1335 100 7e-17 seq4209 86.0 2e-12 seq2982 86.0 2e-12 seq1500 82.4 2e-11 >seq1335 Length=14169 Score = 100 bits (110), Expect = 7e-17 Identities = 69/78 (88%), Gaps = 4/78 (5%) Strand=Plus/Minus Query 24245 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTACGAG 24304 ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 11219 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11160 Query 24305 GATG----TTATTGCTGC 24318 |||| | |||||||| Sbjct 11159 GATGCTGTTCATTGCTGC 11142 >seq4209 Length=1822 Score = 86.0 bits (94), Expect = 2e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 26734 TTGCCTTCAAGATAAACCTCAGAACCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGT 26793 || ||||| | || |||| || ||||| ||||||||||| | || ||||| || | | Sbjct 421 TTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGCGACT 480 Query 26794 TTCCCGCTCATTACCACACGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTA 26853 ||||| || ||||||||||| || |||| || || || ||| |||||||| Sbjct 481 TTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGACTTTCTGTCCCGTTTGCTTG 540 Query 26854 TCACGCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGA 26913 ||| ||| || || || |||| | || || | | || | || | | | ||| | Sbjct 541 TCAGTCCACTGCTCACTTGTTGCAAGGCTGAGATTGGTTACTG-CATTACCGTTCGGTAA 599 Query 26914 ATATCTGATTTCTGGATCATGCCCA-AGGCGACCAATAATGATCACCTTATTTACGCC 26970 || | |||||||||| || ||| ||| | |||| | |||||| ||||||||||| Sbjct 600 GTAGCGAGTTTCTGGATCTTGACCACAGGTG-CCAACCAAGATCACTTTATTTACGCC 656 >seq2982 Length=1456 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 22437 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 22488 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 86 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 137 >seq1500 Length=48209 Score = 82.4 bits (90), Expect = 2e-11 Identities = 143/207 (69%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 26758 CCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGC 26817 || || |||||||| || | || | ||| || || || ||| || ||||| |||||| Sbjct 46661 CCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGC 46720 Query 26818 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 26877 || |||||||||||| ||| || || || || |||||||| |||||| || || Sbjct 46721 CATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCC 46780 Query 26878 ACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCCC 26937 || |||||||| | || || || | |||| || | || ||| ||||||| || Sbjct 46781 ACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCC 46839 Query 26938 AAGGCGACCAATAATGATCACCTTATT 26964 || || || | | ||| ||||| || Sbjct 46840 CAGACGCCCGACGAGGATGACCTTGTT 46866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129284063878140