Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq54 235 6e-57 seq222 194 2e-44 seq3596 104 2e-17 >seq54 Length=99412 Score = 235 bits (260), Expect = 6e-57 Identities = 592/891 (66%), Gaps = 23/891 (3%) Strand=Plus/Minus Query 23217 TTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATT 23276 |||||| ||||| || || ||| |||| || ||||| || || || | || || || | Sbjct 88915 TTTTTGGTATTCACCTACGCGTTTTTCAAAGAAATTGGTTTTCCCTTGTAGGGAGATCAT 88856 Query 23277 TTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTT--ACATGATAATTCCTTT 23334 |||||||| || |||||||| | || ||||| ||| ||| |||||| | Sbjct 88855 CTCCATAAAGTCGAATGGATTGGTCACGTTGTATAC--CTTAGAACACCCTAATTCAAGT 88798 Query 23335 AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATT 23394 || | || ||| || ||||| || || || || |||||| || || || || || Sbjct 88797 AATAACCGATCAGCGACAAACTCGATGTACTGTTTCATCAAGTCGGCATTCATGCCAATG 88738 Query 23395 AGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATT 23454 || || || || | |||||| | ||| | |||||| | || ||||| |||| Sbjct 88737 AGCTTAACAGGTAATGCATCAGTGACAAATTCCTGTTCAATTGCTACTGCATCGGTAATA 88678 Query 23455 ATTTGAACAATAAC---TTCTTCACTAGGTGGATATTTTAAATACTT---AAACAATAAA 23508 |||| | | || ||||| | || ||| |||||| | ||| | |||||| Sbjct 88677 ATTT---CTTTTACCCTTTCTTGTGGAAGTTGATTTTTTAAGTGCTTGGTATACAATAGG 88621 Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| |||||||| | ||||| |||||| ||| | ||| || || || | | Sbjct 88620 CAAGCAAAGTCACAATGCAATCCTTCGTCCCTAGAAATGAGTTCGTTGGAGAAGCTAAGA 88561 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGAA 23627 || ||||||||||| | |||||| | ||| || || | |||||| | | || || ||||| Sbjct 88560 CCGGGCATTAATCCCCTTTTTTTGAGCCAGAAGATCG-AGCAAAAGCTACCAGAGAAGAA 88502 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 ||| || || ||||| |||||||| | || | | | |||| | || | | Sbjct 88501 AATGCCTTCTACAGCTGCAAAGGCAATGAGTCTTTCAGCAAAACTCGCTTGGT------C 88448 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 ||||| | | ||| | || || || ||||| || | || || || || || Sbjct 88447 TATCCAACGTAAAGCCCATTCTGCTTTTTTCTTAACACAGTCGAGGGTGTCGATGGCATT 88388 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 || || | || |||||| | ||| | || || |||||||| || | ||| | Sbjct 88387 GAAAAGGCGATTTCTTTCTTGAGGATCCTTAATGTAGGTATCAATGAGGAGTGAATAGGT 88328 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 ||| ||||| ||||| || | ||||||||| || |||||||| || | || || | | Sbjct 88327 TTCTGAATGGATATTCTCTACAGCAATCTGGAAGCCATAAAAGAATTTGGCCTCTGTATA 88268 Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 || || ||| | ||| ||| ||||||||||| ||||||||||| |||||||| || Sbjct 88267 CTGTACTTCAGCTACAAAGTTTTCTGCTAAATTTTCATTAACAATACCGTCACTAGCTGC 88208 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT-AATTTTTTCCAAT 23986 ||||||||| | || | ||||| |||| |||||| ||| | || ||| | Sbjct 88207 AAAGAAAGCCAATACGTGAGAGATAAAGTGTCGTTCATC-GTTATTCAAGCGGGCCCAGT 88149 Query 23987 CATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCT 24046 | || | |||| ||| |||| || ||| | |||||||| || || || || Sbjct 88148 CTTTGAGGTCTTGACTTAAGTCAATCTCCTCAGCGGTCCAAAAGCTAGCTTCTGCTTTCT 88089 Query 24047 TATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTAT 24097 |||| | ||| ||||||| ||||| || || |||| ||| |||| || Sbjct 88088 TATAAAAGTTCCATATATCATGATGTTCGATAGGGAATAATACAAATCGAT 88038 >seq222 Length=228455 Score = 194 bits (214), Expect = 2e-44 Identities = 227/304 (75%), Gaps = 7/304 (2%) Strand=Plus/Plus Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859 ||||| | || ||||||||||||||||| ||||| ||||| ||||| ||||| | |||| Sbjct 135451 CTATAAGTCTCGGAATGAATATTTTCAATTGCAATTTGAAAACCATAGAAACAACGAGCT 135510 Query 23860 TCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919 || | | |||||| ||| | | ||| | | ||||||||||| ||||| ||||| ||| Sbjct 135511 TCTGGAATTTGAACTTCACTCATGAATTTGGTGGCTAAATTTTCATTAACGATACCGTCA 135570 Query 23920 CTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA--GTTGATAATT 23977 || || ||||||||||| ||||||| |||||||||||||||| | ||| ||||| Sbjct 135571 CTGGCTGCAAAGAAAGCTAGAACATGAGAGATAAAATGTCTTTCATTATCGTT--TAATT 135628 Query 23978 TTTT---CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTG 24034 | || |||||||| ||||| |||| | ||| | ||| || |||||||||| | Sbjct 135629 TATTCTCCCAATCATAGATATCATTTGCAAGATCGATTTCCTCTGCTGTCCAAAATGAAG 135688 Query 24035 CCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATC 24094 | ||| ||| || | |||||||||| ||| || ||||| |||| ||| |||| Sbjct 135689 CTTCAGCATTCTTGTAATATGCCCAAATATCACTATATTTAATTGGGAATAATACAAATC 135748 Query 24095 TATC 24098 |||| Sbjct 135749 TATC 135752 Score = 172 bits (190), Expect = 6e-38 Identities = 218/299 (73%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 23505 TAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGT 23564 |||||| ||||||| |||||||| |||||||| | ||| || | |||||| ||||| || Sbjct 135069 TAAACAGGCAAAATTACAATGTAAACCTTCATCACGACTGATAAGTTCATTGGAAAAAGT 135128 Query 23565 TAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAA 23624 ||||||||||| ||||||| ||||| | ||| || || | | ||| || ||| Sbjct 135129 CAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATCGAACAAAAACTGCCACTAAA 135188 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATC 23684 ||| ||||| || || || ||||| || || | |||| | |||| | | || ||| Sbjct 135189 GAATATACCTTCTACGGCTGCAAAAGCTACCAAACGTTCAGCAAAAGAT---TTTGAATT 135245 Query 23685 AGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGC 23744 | ||||||| | || ||||| ||| ||| |||||||| |||||||||||| || Sbjct 135246 TGTAATCCATCTCAATGCCCAATCAGCTTTCTTCTTTACACATGGAATTGTTTCAATAGC 135305 Query 23745 TTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTAT 23803 || || || ||||||||| || || | | ||||||||||| |||| |||||||| Sbjct 135306 ATTAAATAGTCTAGTTTTTTCATCTGGATTTTTAATATATGTATCGATTAATAAACTAT 135364 >seq3596 Length=2072 Score = 104 bits (114), Expect = 2e-17 Identities = 341/528 (65%), Gaps = 8/528 (2%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| |||||||| | || ||||| || |||||| |||||| ||| |||| Sbjct 37 CAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGC 96 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAA-AAGAA 23627 |||||||| | |||| |||||| | ||| || || | | || | | ||| | ||||| Sbjct 97 CCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAA 155 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 ||| || || || || || || ||||| | |||| |||| || | | | Sbjct 156 AATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA----- 210 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 ||||| || ||| | || || |||||||| || || || | || | Sbjct 211 -ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATG 269 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 || || |||||||||| |||| | ||||| ||||| || || | ||| | Sbjct 270 GAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGT 329 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 |||||| || || ||||| || ||||| || ||||||||||| | ||||| | | Sbjct 330 TTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAG 389 Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 || || || | | || | || | ||||| || ||||| || ||||| ||||| Sbjct 390 CTGTACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGC 449 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATC 23987 ||| |||||||| | || || ||||| | || | || ||| || | ||| | Sbjct 450 AAAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTG 509 Query 23988 ATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGC 24035 || || | || | |||| ||| ||| | ||||| |||||||| Sbjct 510 CTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGC 557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521437324403600