Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycephalum_20[genbank_20GCA_5F900092265.1_202017- 01-02] 7,774 sequences; 48,621,035 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq982 161 2e-34 seq540 156 1e-32 seq322 147 5e-30 seq391 141 2e-28 >seq982 Length=41121 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || || ||||| |||||| | ||||| ||| | |||||| Sbjct 2135 CAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTAGAGGTAGAAGGTTCAGAC 2076 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 2075 ACCATTGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAACAA 2016 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| ||||| || ||||| | |||||||| | || || | ||||| ||| || Sbjct 2015 AGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAACATC 1956 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || ||| | || | ||||| ||| Sbjct 1955 CAAAAAGAATCTACTCTCCATTTAGTCCTCAGACTTAGA 1917 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || || ||||| |||||| | || || ||| | || ||| Sbjct 2819 CAAATTTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTTGAAGGTTCTGAC 2760 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||| ||||||||||| ||||| || || || ||| Sbjct 2759 ACCATTGAAAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAACAA 2700 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| |||||||| ||||| | |||||||| | ||| | |||| || ||| || Sbjct 2699 AGACTTATTTTCGCCGGTAAACAATTAGAAGATGGTCGTACTTTATCCGACTACAACATC 2640 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||| || ||| | || | ||||| ||| Sbjct 2639 CAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTTAGA 2601 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| |||||| | || || ||| | || ||| Sbjct 2363 CAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTCGAAGGTTCTGAC 2304 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 2303 ACCATCGAAAACGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAACAA 2244 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| ||||| ||||| | |||||||| | ||| | |||| || ||| || Sbjct 2243 AGACTTATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAACATC 2184 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| |||||||| || ||| | || | ||| | ||| Sbjct 2183 CAAAAGGAATCAACCCTCCATTTGGTACTTAGATTAAGA 2145 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || || ||||| |||||| | || || ||| | || ||| Sbjct 2591 CAAATTTTTGTCAAGACCTTGACCGGTAAAACTATCACCTTGGAAGTTGAAGGTTCTGAC 2532 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 2531 ACCATTGAAAATGTCAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAACAA 2472 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| ||||| || ||||| | |||||||| | ||| | |||| || ||| | Sbjct 2471 AGACTTATTTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAACATT 2412 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| |||||||| || ||| | || | |||||| Sbjct 2411 CAAAAGGAATCAACCCTCCATTTGGTACTTAGACTC 2376 >seq540 Length=89862 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || ||||| ||||| | || || || |||| ||| Sbjct 83862 CAAATTTTTGTTAAAACCTTGACCGGTAAAACAATCACATTAGAAGTTGAGGGCTCTGAC 83921 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || || |||||||| ||||| || || || ||| Sbjct 83922 ACCATTGAAAACGTCAAGACCAAGATCCAAGATAAAGAAGGTATCCCACCCGATCAACAA 83981 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || ||||| ||||| | |||||||| | || || | ||||||||| || Sbjct 83982 AGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTATAACATC 84041 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||| || ||| | || | ||||| ||| Sbjct 84042 CAAAAAGAATCAACCCTTCATTTAGTCCTCAGACTTAGA 84080 Score = 150 bits (166), Expect = 4e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || ||||| ||||| | || || ||| | || ||| Sbjct 84318 CAAATTTTTGTTAAAACCTTGACCGGTAAAACCATCACATTAGAAGTTGAAGGTTCTGAC 84377 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||| || || ||||| || ||| || || || |||||||| ||||| || || || || Sbjct 84378 ACCATTGAAAATGTCAAGACCAAA-ATCCAAGATAAAGAAGGTATCCCACCCGATCAACA 84436 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | ||||||| || ||||| ||||| | |||||||| | || || | ||||| ||| | Sbjct 84437 AAGACTTATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTCTCTGATTACAACAT 84496 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||||| || ||||| ||| | ||| | ||| Sbjct 84497 CCAAAAAGAATCAACCCTCCATCTCGTTCTTAGATTAAGA 84536 >seq322 Length=112280 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || || ||||| || ||| | || || ||| | || ||| Sbjct 11236 CAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCTGAC 11295 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| || || || ||||||||||| ||||| || || || ||| Sbjct 11296 ACCATCGAAAACGTTAAAACCAAAATCCAAGACAAAGAAGGTATCCCACCCGATCAACAA 11355 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || || ||||| | |||||||| | ||| | |||| || ||| || Sbjct 11356 AGACTTATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCCGACTACAACATC 11415 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 |||||||||||||| || ||| | || | |||||| Sbjct 11416 CAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTC 11451 Score = 138 bits (152), Expect = 3e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| |||||| | || || ||| | || || Sbjct 11692 CAAATCTTTGTAAAGACCTTGACCGGTAAAACAATCACCTTGGAAGTAGAAGGTTCTGAT 11751 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||| || |||||||| || ||| || || ||||||||||| ||||| || || || || Sbjct 11752 ACCATTGAAAACGTCAAGACCAAA-ATCCAAGACAAAGAAGGTATCCCACCCGATCAACA 11810 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | |||| || || || || ||||| | |||||||| | ||||| | || || ||| | Sbjct 11811 AAGACTCATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACAT 11870 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||||||| ||| | || | ||| | ||| Sbjct 11871 CCAAAAAGAATCAACACTCCATTTGGTACTTAGATTAAGA 11910 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || | || || ||||| || ||| | || || ||| |||| ||| Sbjct 11920 CAAATTTTTGTCAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGCTCTGAC 11979 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || || || ||||| ||||| || || || ||| Sbjct 11980 ACCATTGAAAATGTCAAGACCAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAACAA 12039 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||| || || || || || | |||||||| | || || | || || ||| || Sbjct 12040 AGACTTATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACCCTCTCTGACTACAACATC 12099 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||||| || ||| | || | ||||| ||| Sbjct 12100 CAAAAAGAATCAACTCTCCATTTAGTCCTCAGACTTAGA 12138 Score = 127 bits (140), Expect = 5e-24 Identities = 151/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| || ||| | || || ||| | || || Sbjct 11008 CAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCTGAT 11067 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||| || || ||||| || ||| || || ||||||||||| ||||| || ||||| || Sbjct 11068 ACCATTGAAAATGTCAAGACCAAA-ATCCAAGACAAAGAAGGTATCCCACCCGACCAACA 11126 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | ||||||| || || || ||||| | |||||||| | ||||| | || || ||| | Sbjct 11127 AAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACAT 11186 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 |||||||||||| || || ||| Sbjct 11187 CCAAAAAGAATCTACCCTTCAT 11208 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| || ||| | || || ||| | || || Sbjct 11464 CAAATCTTTGTAAAGACCTTGACCGGTAAAACTATTACCTTAGAAGTTGAAGGTTCTGAT 11523 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 11524 ACCATTGAGAATGTAAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGACCAACAA 11583 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || || ||||| | ||||| || | || || | || || ||| || Sbjct 11584 AGACTCATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACCCTCTCTGACTACAACATC 11643 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || ||| | ||| | ||||| ||| Sbjct 11644 CAAAAAGAATCTACTCTCCATTTAGTTCTCAGACTTAGA 11682 >seq391 Length=66319 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||| || ||||| || ||||| || || | |||||||||||||| |||||||| || Sbjct 37410 AGGTAAGACGATTACTCTCGAAGTAGAGGGATCAGACACCATCGAAAACGTCAAGGCTAA 37351 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 || || ||||||||||| ||||| || || || ||| |||||||||| || || ||||| Sbjct 37350 AATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACA 37291 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 | |||||||| | ||| | ||||| ||| ||||||| |||||||| || ||| | Sbjct 37290 ATTAGAAGATGGTCGTACTTTACAAGATTACAACATCCAAAAGGAATCAACCCTCCATTT 37231 Query 178127 TGTTTTGAGACTC 178139 ||| | |||||| Sbjct 37230 AGTTCTCAGACTC 37218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203611303106156