Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq246 100 2e-16 seq242 98.7 9e-16 seq86 86.0 5e-12 seq7 84.2 2e-11 >seq246 Length=49296 Score = 100 bits (110), Expect = 2e-16 Identities = 167/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 28950 AATAGTGTAAAA-ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGA 29008 |||| | ||||| |||||||| || | ||||| | || ||||||||||| ||| || Sbjct 11280 AATAATTTAAAACATGCAAATTTTTGTAAAAACCCTTACTGGCAAAACCATCACCTTAGA 11221 Query 29009 AACGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGT 29068 ||| | || || | | || | || ||||| |||||||||||| | Sbjct 11220 GGTCGAAGGTTCTGATACTATTGAAAATGTAAAAGCTAAAATCCAAGATAAAGAAGGTAT 11161 Query 29069 GCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTAT 29128 || |||||||||||||||||||||||| || |||||| | |||||| ||| | Sbjct 11160 CCCACCAGATCAACAAAGACTTATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCT 11101 Query 29129 GGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||| ||||||||||| || |||||||| || || | || ||| || | || || || Sbjct 11100 TTCCGACTACAATATTCAAAAAGAATCTACCCTCCATTTAGTTTTAAGACTTCGTGGTGG 11041 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| || || || ||||||||||| ||| ||| | Sbjct 10811 ATGCAAATTTTTGTAAAAACCTTAACTGGTAAAACCATTACTTTAGAAGTCGAAGGTTCT 10752 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| |||||||||||| | || ||||||| Sbjct 10751 GATACCATCGAAAATGTAAAAGCCAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAA 10692 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || ||||| || |||||| | |||||| ||| | |||| |||||| Sbjct 10691 CAACGTCTCATTTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCCGACTACAAT 10632 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| |||||||| | || ||| ||||| |||| || Sbjct 10631 ATTCAAAAAGAATCAACTCTTCATTTAGTATTAAGATTAAGAGGTGG 10585 >seq242 Length=49570 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| || || || ||||||||||| ||| ||| | || Sbjct 3833 ATGCAAATTTTCGTTAAAACTTTAACCGGTAAAACCATTACTTTAGAAGTTGAAGGCTCA 3774 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | |||| |||||| || ||||||||| | || ||||||| Sbjct 3773 GATACTATTGAAAACGTTAAAACTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAA 3714 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||||||||| ||||| || |||||| | |||||| ||| | | || ||||| Sbjct 3713 CAAAGACTTATTTTTGCAGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGACTACAAC 3654 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| ||||| || | || | ||||| |||| || Sbjct 3653 ATTCAAAAAGAATCAACTCTCCATTTAGTTCTTAGATTAAGAGGTGG 3607 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | || || |||||||||||| |||| ||| | || Sbjct 4517 ATGCAAATTTTTGTTAAAACCCTTACTGGTAAAACCATTACCCTCGAAGTCGAAGGCTCA 4458 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | || ||||| |||||||||||| | || ||||||| Sbjct 4457 GATACAATTGAAAACGTCAAAACCAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAA 4398 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||||||||| ||||| || |||||| | |||||| ||| | | || || ||| Sbjct 4397 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGACTATAAT 4338 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || ||||| ||||| || | || | ||||| |||| || Sbjct 4337 ATCCAAAAAGAATCAACTCTCCATTTAGTTCTTAGATTAAGAGGTGG 4291 >seq86 Length=87693 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || |||||||| ||| |||| ||| | || Sbjct 63068 ATGCAAATTTTCGTCAAAACCCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGGCTCA 63127 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | || || ||| |||||||||||| | || ||||||| Sbjct 63128 GATACCATCGAAAACGTCAAAACCAAGATTCAAGATAAAGAAGGTATCCCACCAGATCAA 63187 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || ||||| || |||||| | |||||| ||| | | || ||||| Sbjct 63188 CAACGTCTCATTTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAAC 63247 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| ||||| || | || ||| || | || || || Sbjct 63248 ATTCAAAAAGAATCAACTCTCCATTTAGTTTTAAGACTCCGTGGTGG 63294 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| | || || |||||||| ||| |||| ||| || Sbjct 63296 ATGCAAATTTTTGTCAAAACCCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGGTTCA 63355 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| ||||| || ||||||||| | || ||| ||| Sbjct 63356 GATACCATTGAAAATGTTAAAACCAAAATCCAAGACAAAGAAGGTATCCCACCAGACCAA 63415 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | ||||| || || || |||||| | |||||| ||| | | ||||||||| Sbjct 63416 CAACGTCTTATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAT 63475 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| ||||| || | || | ||||| |||| || Sbjct 63476 ATTCAAAAAGAATCAACTCTCCATTTAGTTCTTAGATTAAGAGGTGG 63522 >seq7 Length=199231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || | || || ||||| ||||| ||| ||| | || Sbjct 43542 ATGCAAATTTTCGTAAAGACTCTTACCGGTAAAACTATTACATTAGAAGTTGAAGGCTCA 43601 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | |||| || ||| |||||||||||| | || ||||||| Sbjct 43602 GATACCATCGAAAACGTTAAAACCAAGATTCAAGATAAAGAAGGTATCCCACCAGATCAA 43661 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | ||||||||||| ||||||||| | |||||| || | || | | || |||| Sbjct 43662 CAACGTCTTATCTTTGCAGGCAAACAATTAGAAGATGGTCGTACCCTCT--CAGACTACA 43719 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||| || || |||||||| || || | || | ||||| |||| || Sbjct 43720 ATATCCAAAAAGAATCTACCCTCCATTTAGTTCTCAGATTAAGAGGTGG 43768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428331828944345