Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq213 156 4e-33 >seq213 Length=53756 Score = 156 bits (172), Expect = 4e-33 Identities = 231/322 (72%), Gaps = 9/322 (3%) Strand=Plus/Minus Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 |||||||||| || ||||| || || || || ||||||||||||||||||||||||| Sbjct 47992 TTTCAGAGTGAATATTTTCAATTGCAATTTGGAAACCATAAAAACATCTAGCTTCTGGAA 47933 Query 14562 ATTGTACCTCTGAGTAA--AATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14619 ||| ||||| | | | ||||| ||| | |||||| || || ||||||||| ||| Sbjct 47932 TTTGGACCTC--ACTCATGAATCTAGTGGCAAGATTTTCGTTTACAATACCATCAGAAGC 47875 Query 14620 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTT---TTTT 14676 ||||| ||||| || | || |||||| | | || | || | |||||| | | Sbjct 47874 GGCAAAGAATGCTAAAACATTGGAAATAAAATGACGTTCGTTATCGTTGAGTTTACTACT 47815 Query 14677 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736 ||||||| | ||| | |||||| | ||| || ||||||||||||| || | || Sbjct 47814 CCAATCGTTGAGATCTGGTGCAAGATCAATTTCTTCTGCTGTCCAAAAACTTGCTTCTGC 47755 Query 14737 TTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT-TGAAG 14795 || ||||||||| ||| || ||| ||| ||| ||||| | ||||||||| | Sbjct 47754 TTGTTTATACATACTCCAGATATCTGGGTATTTTATTGGAAATAATACAAATCTATCTTT 47695 Query 14796 ATGTTTCTTTAAGAATTGGTTC 14817 || ||||||| | ||||||||| Sbjct 47694 AT-TTTCTTTTAAAATTGGTTC 47674 Score = 132 bits (146), Expect = 5e-26 Identities = 347/522 (66%), Gaps = 23/522 (4%) Strand=Plus/Minus Query 13936 TTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGT 13995 ||| || ||||| ||||| | || || || || ||||||| ||||||| ||||||| Sbjct 48625 TTCGAAAAAGTTTGTTTTTCTTTGGAGGGAAATCATTTCCATCCAATCAAAAGGATTTGA 48566 Query 13996 TGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAAT 14055 | || | | || | | |||| | | | | | | ||| ||| || ||||| Sbjct 48565 AGCATTATAAATCTTTTTATAACCCAATGAGACCAAAAGACGATCAGCACAAAATTCAAT 48506 Query 14056 ATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAA 14115 |||||||||||| || || ||||||||| |||| | ||| || | | | | || Sbjct 48505 GTATTGAGACATTGAACGACTATTCATACCAATTAAATCTACTGGTAA-AGAGTCACAAA 48447 Query 14116 -AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAA-----TTTCATT 14169 |||||||||||| | || || || | ||||||| | || || ||| Sbjct 48446 TAAATTCTTTTTCGCAAACAACGGCATC---TCTAATAATGGCTTCAAGAGTCTTGGATT 48390 Query 14170 AGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCC 14227 || | |||| || | ||| ||||| ||| ||||||| |||||||| || Sbjct 48389 CGAGTTTGTTTATTAATTTGGTGTATAAAAG----ACATGCAAAATTGCAATGAAGACCT 48334 Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 ||||| | | || | |||||||||||| ||||| |||||||| || |||| || ||| Sbjct 48333 TCATCACGAGAGATTAATTCGTTTGAAAAGGTTAAACCTGGCATTAAACCTCTCTTCTTT 48274 Query 14288 AACC--AAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 |||| |||||| | || | | | |||| || || ||||| ||||| ||||| | Sbjct 48273 AACCAGAAAATACTACAAAAACTACCACTGAAA--AAGATACCCTCTACTGCGGCAAATG 48216 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | || |||||| |||| || | | || || ||||||||| ||||| |||| Sbjct 48215 CAACCAAACGTTCTGCAAAAGAATCACTATTATT---AATCCATTTTAATGCCCAATCAG 48159 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14447 ||| ||||||||| | || || || || || ||||||| Sbjct 48158 CTTTCTTTTTAATACATGGAATGGTATCTATTGCGTTAAATA 48117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482340782573320