Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq213 89.7 1e-12 >seq213 Length=53756 Score = 89.7 bits (98), Expect = 1e-12 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGT-GCAT 101960 ||| || |||| | ||||| ||||| ||||| || || ||||| || |||||| | | Sbjct 48196 TTTTGCAGAACGTTTGGTTGCATTTGCCGCAGTAGAGGGTATCTTTTTCAGTGGTAGTTT 48255 Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020 | | | ||||||||| | ||||| || ||| | |||| ||| | |||| || || | Sbjct 48256 TTGTAGT-ATTTTCTGGTTAAAGAAGAGAGGTTTAATGCCAGGTTTAACCTTTTCAAACG 48314 Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATG 102063 | || || ||| | || |||||||||||| || | |||||||| Sbjct 48315 AATTAATCTCTCGTGATGAAGGTCTTCATTGCAATTTTGCATG 48357 Score = 87.8 bits (96), Expect = 4e-12 Identities = 178/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 101509 AGATCTCTGGGAAATGTACAAAAAAGAGGTTGCCTGTTTTTGGACATTGGAAGAGATTGA 101568 |||| ||||| ||||| ||| ||| | || ||||||||||| ||||| ||||| Sbjct 47730 AGATATCTGGAGTATGTATAAACAAGCAGAAGCAAGTTTTTGGACAGCAGAAGAAATTGA 47789 Query 101569 TTTCGAAAGGGATCCTAAAGATTGGGAGAAACTCACTCAA-GATGA-GAAGG--ATTTCA 101624 | | | | |||| || |||||| || | |||||| ||| | ||| | |||| | Sbjct 47790 TCTTGCACCAGATCTCAACGATTGG-AGTAGTAAACTCAACGATAACGAACGTCATTTTA 47848 Query 101625 TTCTCCAGATTCTGGCGTTCTTTGCATCCTCTGACGGAATTGTAATTGAAAATCTTACAA 101684 || | | || | || |||||||| | ||||| || ||||||| ||||||||| | | Sbjct 47849 TTTCCAATGTTTTAGCATTCTTTGCCGCTTCTGATGGTATTGTAAACGAAAATCTTGCCA 47908 Query 101685 CACGTCTTCGTCAA-GTGGCGCAGATTCCAGAAGCGAGGAGTTTCTTTGACTTCCAAGTT 101743 | | ||| | | | || || ||||||||||| || |||| | || |||||| || Sbjct 47909 CTAGA-TTCATGAGTGAGGTCCAAATTCCAGAAGCTAGATGTTTTTATGGTTTCCAAATT 47967 Query 101744 GGAATGGAGAGTATTCA 101760 | ||| || | |||||| Sbjct 47968 GCAATTGAAAATATTCA 47984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989573869443045