Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq230 244 1e-59 seq213 147 3e-30 >seq230 Length=51241 Score = 244 bits (270), Expect = 1e-59 Identities = 1199/1892 (63%), Gaps = 70/1892 (4%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||| | | | | || || ||||| ||||||||||| || ||||| ||| Sbjct 27987 GTGAATTGAATAGCATCAGCAGCTGGACGAGTACGGAGATAGTACATACCAGTTTTGAGA 28046 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || |||| ||| |||||||| || ||||| | | || | || || || ||| Sbjct 28047 CCTTTTTTCCAAGAGTAGAAATGCATTGATGTAAGTTTAGCAAAAGTTGGTTCAGCAATA 28106 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 | ||| | | |||||||||||| || || || || | || |||||||| | || Sbjct 28107 AAAACATTGAAACTTTGACTTTGATCAATAAAAGCACCACGATCAGCAGCCATATCAATT 28166 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 | || ||||| ||||||||||| ||||| |||| | |||| ||| ||||||| | Sbjct 28167 AATGTTCTTTGTCTAATTTCCCAAACTGTTTTGTAAAGTTCTTTAAGATCATCTGGAATG 28226 Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA--TCTCATCAT 62340 || || | ||||| || |||| | | | || |||||| | ||| | | Sbjct 28227 GATGGGATACTTTGAATTGAACCACGGTTGAGAACGATTTGATTCTTTAATTCTGGTGA- 28285 Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400 ||| | | | ||| | | | || || || || || || | ||||| | Sbjct 28286 -CCAAATTCCTAACTCCATGAGATCTTCGAGAAGTTGTTTATTGACAATAGTAAATTCAC 28344 Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460 ||| || || | ||| ||||||| ||||||||||| ||||| | | || || || | Sbjct 28345 CAGCTAAAACACGACGACTGTAAATGTTACTGGTATATGGTTCAAAGCATTCGTTGTTAC 28404 Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520 | |||||||| | |||||||||||| ||||| ||||| | || | || | ||||| Sbjct 28405 CTAAAATTTGTGAAGTTGATGCAGTTGGCATTGGTGCTATTAAAAGTGAGTTACGAAGAC 28464 Query 62521 CGTATGTTCTGA---TTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAA 62577 | | | | | |||||||||| |||| ||| |||||| ||| | ||| || Sbjct 28465 CACCTTTATTAACAATTTTATCTTTGAGATCAGTCCAGTTCCAACGATTTGTTGGTGTAA 28524 Query 62578 CANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCAT 62637 || ||||| |||||||| | ||||| || ||| | |||| |||| Sbjct 28525 CATTCCAGAAATCGTATTGGAGAATACCTTGGCTGGCTGGTGAACCTTTAAATGTTTCAT 28584 Query 62638 ATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGC------CTCTAATG-CACCGTAATAA 62690 |||| ||||| | || || ||||| || ||| | || | ||||| Sbjct 28585 ATGGACCTTCAATAAGAGATA-------ACTCGTGTGATGCTGTAAGGGCAGCAAAATAA 28637 Query 62691 ATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGG-CTATCAAATGG-ATAAT 62748 || ||||| || | | |||| || ||| | ||| | ||||||||| ||| Sbjct 28638 ATAGTTTCTGCAATTTCAATGTTTA-ATTTTGCGGCAGCGGTACCATCAAATGGCATACG 28696 Query 62749 TTAAGA-GAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 ||| |||| || | || || | ||||||| ||||||||| || || | |||||| Sbjct 28697 --AAGTTGAATGAAAACATCAGCAAGACCTTGAATACCAATACCAATTGGACGATGTCTT 28754 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 ||||||| ||| |||||| ||| ||||| || ||| ||| |||||||| || ||| Sbjct 28755 AAATTAGAGGTTTTGGCTTCTTGAACTGGATAGTAGTTACGATCAATAATTTTGTTAAGA 28814 Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC--------- 62918 || || || | ||| | || | ||||| || ||||||| Sbjct 28815 TTCTTGGTAACAATTTTAGTGATTTCATAAAGTTTTTGATGATCAAATTCTTTTTCTTTT 28874 Query 62919 ------------CCATCTATT--ACAAAC--ATGTTC--AATGCAACAGATGCCAGATTA 62960 || ||| || || || || || || |||| ||||| |||||| Sbjct 28875 GGATTGGTTGAACCTTCTTTTCTACGAATGAATTTTGGTAAGGCAATGGATGCGAGATTA 28934 Query 62961 CACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 63020 || || || | ||||| | | ||||| || || || || ||||||||||| | Sbjct 28935 CATACAGCAATCTCATCTGGGGATGTGTATTGAATAATTTCGGTACAAAGATTACTGCTG 28994 Query 63021 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63080 | ||||| || | ||| | |||||| || ||||| | ||| ||||| ||||| Sbjct 28995 CTAATAGTACCAAGATTCTTTTGATTGGATTTAGAATTACAAGAATCTTTATAGAGAATA 29054 Query 63081 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 63140 ||||| ||||||||||||| ||||| || || || || ||| | || |||| || Sbjct 29055 AATGGTGTACCAGTTTCAACTTGAGACTCCATGATTGCAAACCAAAGTTCTTGAGCTTTA 29114 Query 63141 ATTATAGATTT-GTATCTCCTT-TCTCTTT-CGTATA-GAGTATACAATCGTTCGAACTC 63196 |||| | | | | | ||| | | ||| | ||| ||| ||| | |||| | Sbjct 29115 ATTACACGTCTAGCAAGGCCTGGTGTATTTTCATATTTGAG-ATAAA---GTTCACGATG 29170 Query 63197 GTCTCCCCAAACATTGTC--CAAT-CTAGGACATTCATCCGGACACATCAACGACCACTC 63253 ||| | | | | || ||| | || ||| | ||||| | | ||||| || Sbjct 29171 TTCTTCTGAGTGAGTTTCGTCAAGACGTGGGGCTTCGTTAGGACAAAAGAGTGACCAATC 29230 Query 63254 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63313 ||||| | | |||| || ||| || ||||| | ||||||||| ||| ||||| Sbjct 29231 TCCGTTTTGTTCTACTCTTTCCATGAAAAGATCGCTGACCCAAAGAGCGTAAAAGAGATC 29290 Query 63314 TCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 63373 ||| | ||| ||| || || || ||||||||| || || | || | | |||||| Sbjct 29291 TCTGGCTCTCATTTCTTCCTTACCATGATTCTTTTTGAGTTCAATAAATTCAAAAATATC 29350 Query 63374 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63433 || ||||| ||||| | |||| || | | || | ||| || || ||||| Sbjct 29351 TGAGTGCCATGGTTCGAGATATACTGCAAAGGCACCTTTTCTTTTACCACCACCTTGATC 29410 Query 63434 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACC 63493 || || | ||| || | ||| |||| | | |||||| | | ||| || | || Sbjct 29411 TACATAACGAGCAGTATCATTGAAAACACGGAGCATTGGTACCAAACCATTACTGGTGCC 29470 Query 63494 ATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCC 63553 ||||||||| ||||| | | | ||||||||| ||| | | |||||| || Sbjct 29471 ATTGGTACCACGAATATAACTTTGAGCGGCACGAATCTTATGGCAAGCAATACCTATACC 29530 Query 63554 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCT 63613 ||||| ||| || ||||| || ||| |||| | || ||||| || || || || Sbjct 29531 ACCTGCAGATTTTGAAATTAAAGCACATTGTTTGAGGGTATCATAAATACCATCGATTGA 29590 Query 63614 ATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATT 63673 ||| || |||| | || || ||| || |||||||| | | || || ||||| Sbjct 29591 ATCCTCTTTCATTTGAACTAAAAAGCATGAGGACATTTGTGGGTATGGTGTACCAGCATT 29650 Query 63674 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 63733 || | || || | || || ||||| ||||| | | | | ||| || ||| Sbjct 29651 GAAAAGAGTTGGTGTGGCATGTGTAAAGAGTTTTTGACTTAATTTCTCGTAGGTAAGAAT 29710 Query 63734 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793 || ||| ||||| |||||| || | | |||||||||| |||||| || || Sbjct 29711 TGCATTGTCGATATCGTTACCATGAATACCGATAGAAACACGCATTAGCATGTGTTGTGG 29770 Query 63794 TCTTTCAACAATTTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAAC 63852 | |||||| || | ||||| | | | ||| || || ||| || ||||| |||| Sbjct 29771 ACGTTCAACGATGCTATTGTTGA-TACGATGAAGATATGAACGTTCTAATGTTTTGAAAC 29829 Query 63853 CAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63884 |||| | | ||| || || |||| |||| Sbjct 29830 CAAAGAAATCGTAATCGAAATCACGTTGGTAA 29861 >seq213 Length=53756 Score = 147 bits (162), Expect = 3e-30 Identities = 385/572 (67%), Gaps = 24/572 (4%) Strand=Plus/Minus Query 33314 TTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGT 33373 ||||||||| || ||||||| || | || || ||||||| ||||||| ||||| | Sbjct 48625 TTCGAAAAAGTTTGTTTTTCTTTGGAGGGAAATCATTTCCATCCAATCAAAAGGATTTGA 48566 Query 33374 AACATTGTAAAtttttttAAATCCCAATTCAGAAATCAAT---CTATCTGCGACGAATTC 33430 | |||| ||||| |||||| | |||||| || | ||| | ||| || ||||| Sbjct 48565 AGCATTATAAATCTTTTTATAACCCAAT---GAGACCAAAAGACGATCAGCACAAAATTC 48509 Query 33431 TATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGG--AAGAGCCACA 33488 || ||| ||| || |||||| || || | | ||||| ||||| |||| Sbjct 48508 AATGTATTGAGACATTGAACGACTATTCATACCAATTAAATCTACTGGTAAAGAGTCACA 48449 Query 33489 GTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCA 33548 || |||||||| ||| || |||| | | ||||| | || || | | | Sbjct 48448 --AATAAATTCTTTTTCGCAAACAACGGCATCTCTAATAATGGCTTCAAGAGTCT-TGGA 48392 Query 33549 CTCG-GTGGATGTAATAAAT--GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCC 33605 ||| || | || ||| | || || | | | |||||| |||| ||| || ||||| Sbjct 48391 TTCGAGTTTGTTTATTAATTTGGTGTATAAA--AGACATGCAAAATTGCAATGAAGACCT 48334 Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTT-TTT 33664 || || | | ||||||||||| ||||| || | || ||||||| || | ||| ||| Sbjct 48333 TCATCACGAGAGATTAATTCGTTTGAAAAGGTTAAACCTGGCATTAAACCTCTCTTCTTT 48274 Query 33665 AAGC-CAAAATA-TGGAAGCGAATGATC-CGGAAAAGAAGATTCCTTCTACTGCAGCAAA 33721 || | |||||| | || || | | | |||| ||||| || |||||||| ||||| Sbjct 48273 AACCAGAAAATACTACAA--AAACTACCACTGAAA--AAGATACCCTCTACTGCGGCAAA 48218 Query 33722 GGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGC 33781 |||| | | ||| || || | || | || ||||| ||| |||||||| || Sbjct 48217 TGCAACCAAACGTTCTGCAAAAGAATCACTATTATTAATCCATTTTAATGCCCAATCAGC 48158 Query 33782 CTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACT 33841 |||||||| | ||| || || || ||||| || ||||| || | |||||| | | | Sbjct 48157 TTTCTTTTTAATACATGGAATGGTATCTATTGCGTTAAATAGTTTACTTTTTTGCTCATT 48098 Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 |||||||| ||| ||||| || |||||||||| Sbjct 48097 ATCTTTAATATATGTATCAATTAAAAGACTAT 48066 Score = 127 bits (140), Expect = 3e-24 Identities = 212/303 (70%), Gaps = 5/303 (2%) Strand=Plus/Minus Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 |||| || ||||| |||||||| || || || || || || ||||||||||| || | || Sbjct 47992 TTTCAGAGTGAATATTTTCAATTGCAATTTGGAAACCATAAAAACATCTAGCTTCTGGAA 47933 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 | || || || | |||| || | |||||| || || || |||||| || | Sbjct 47932 TTTGGACCTCACTCATGAATCTAGTGGCAAGATTTTCGTTTACAATACCATCAGAAGCGG 47873 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGTGTTAGTT---TATTC 34052 |||| || || || |||| ||||||| |||| | | || | |||| || || Sbjct 47872 CAAAGAATGCTAAAACATTGGAAATAAAATGACGTTCGTTATCGT-TGAGTTTACTACTC 47814 Query 34053 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 ||||| |||| |||| | | ||| | |||||| |||||||||| ||| ||||| Sbjct 47813 CAATCGTTGAGATCTGGTGCAAGATCAATTTCTTCTGCTGTCCAAAAACTTGCTTCTGCT 47754 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 | |||||||||| ||||||| || | |||| ||||| || | |||||||||| | | Sbjct 47753 TGTTTATACATACTCCAGATATCTGGGTATTTTATTGGAAATAATACAAATCTATCTTTA 47694 Query 34173 TTT 34175 ||| Sbjct 47693 TTT 47691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811309696720