Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq230 223 5e-53 seq213 159 5e-34 >seq230 Length=51241 Score = 223 bits (246), Expect = 5e-53 Identities = 1190/1889 (63%), Gaps = 64/1889 (3%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| | | | | || || ||||| ||||||||||| || ||||| ||| Sbjct 27987 GTGAATTGAATAGCATCAGCAGCTGGACGAGTACGGAGATAGTACATACCAGTTTTGAGA 28046 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || |||| ||| |||||||| || ||||| | | || | || || || ||| Sbjct 28047 CCTTTTTTCCAAGAGTAGAAATGCATTGATGTAAGTTTAGCAAAAGTTGGTTCAGCAATA 28106 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 | ||| | | |||||||||||| || || || || | || |||||||| | || Sbjct 28107 AAAACATTGAAACTTTGACTTTGATCAATAAAAGCACCACGATCAGCAGCCATATCAATT 28166 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 | || ||||| ||||||||||| ||||| |||| | |||| ||| ||||||| | Sbjct 28167 AATGTTCTTTGTCTAATTTCCCAAACTGTTTTGTAAAGTTCTTTAAGATCATCTGGAATG 28226 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA--TCTCATCAT 65133 || || | ||||| || |||| | | || |||||| | ||| | | Sbjct 28227 GATGGGATACTTTGAATTGAACCACGGTTGAGAACGATTTGATTCTTTAATTCTGGTGA- 28285 Query 65134 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 65193 ||| | | | ||| | | | || || || || ||| || | |||||| | Sbjct 28286 -CCAAATTCCTAACTCCATGAGATCTTCGAGAAGTTGTTTATTGACAATAGTAAATTCAC 28344 Query 65194 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 65253 ||| || || | ||| ||||||| ||||||||||| ||||| | | || || || | Sbjct 28345 CAGCTAAAACACGACGACTGTAAATGTTACTGGTATATGGTTCAAAGCATTCGTTGTTAC 28404 Query 65254 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 65313 | |||||||| | |||||||||||| ||||| ||||| | || | || | ||||| Sbjct 28405 CTAAAATTTGTGAAGTTGATGCAGTTGGCATTGGTGCTATTAAAAGTGAGTTACGAAGAC 28464 Query 65314 --CGTATGTT-CTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA 65370 | | | || ||||||||||| ||| ||| |||||| ||| | ||| || Sbjct 28465 CACCTTTATTAACAATTTTATCTTTGAGATCAGTCCAGTTCCAACGATTTGTTGGTGTAA 28524 Query 65371 CNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGT 65430 | ||| |||||||| | ||||| || ||| | |||| || | Sbjct 28525 CATTCCAGAAATCGTATTGGAGAATACCTTGGCTGGCTGGTGAACCTTTAAATGTTTCAT 28584 Query 65431 ATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA-TGCACCGTAATAAATGGTT 65489 |||| ||||| | || || || | || ||| ||| | ||||||| ||| Sbjct 28585 ATGGACCTTCAATAAGAGATAACTCGTGTGATG-CTGTAAGGGCAGCAAAATAAATAGTT 28643 Query 65490 TCGAAGATCTTCTTATTTAGATCTTG-TGCTTCCAGGCTATCAAATGG-ATAATTTAAG- 65546 || || | | |||| || ||| || | | ||||||||| ||| ||| Sbjct 28644 TCTGCAATTTCAATGTTTA-ATTTTGCGGCAGCGGTACCATCAAATGGCATA--CGAAGT 28700 Query 65547 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 65606 |||| || | || || | ||||||| ||||||||| || || | |||||| |||| Sbjct 28701 TGAATGAAAACATCAGCAAGACCTTGAATACCAATACCAATTGGACGATGTCTTAAATTA 28760 Query 65607 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 65666 ||| ||| |||||| ||| ||||| || ||| ||| |||||||| || ||||| || Sbjct 28761 GAGGTTTTGGCTTCTTGAACTGGATAGTAGTTACGATCAATAATTTTGTTAAGATTCTTG 28820 Query 65667 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATTACA--- 65723 || | ||| | || | ||||| || ||||||| | ||| || | Sbjct 28821 GTAACAATTTTAGTGATTTCATAAAGTTTTTGATGATCAAATTCTTTTTCTTTTGGATTG 28880 Query 65724 ----AAC--------------ATG--TT----CAATGCAACAGATGCCAGATTACAAACG 65759 ||| ||| || || |||| ||||| |||||||| || Sbjct 28881 GTTGAACCTTCTTTTCTACGAATGAATTTTGGTAAGGCAATGGATGCGAGATTACATACA 28940 Query 65760 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 65819 || | ||||| | | ||||| || || || || ||||||||||| | | || Sbjct 28941 GCAATCTCATCTGGGGATGTGTATTGAATAATTTCGGTACAAAGATTACTGCTGCTAATA 29000 Query 65820 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 65879 || || | ||| | |||||| || ||||| | ||| ||||| ||||| ||||| Sbjct 29001 GTACCAAGATTCTTTTGATTGGATTTAGAATTACAAGAATCTTTATAGAGAATAAATGGT 29060 Query 65880 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 65939 ||||||||||||| ||||| || || || || ||| | || |||| || |||| | Sbjct 29061 GTACCAGTTTCAACTTGAGACTCCATGATTGCAAACCAAAGTTCTTGAGCTTTAATTACA 29120 Query 65940 -GATTTGTA--------TCTCTTTTC-TCTTTCGTATAGTGTATACAATCGTTCGAACTC 65989 | | | | | | ||||| | ||| ||| || || || || || Sbjct 29121 CGTCTAGCAAGGCCTGGTGTATTTTCATATTTGAGATAAAGTTCACGAT-GT------TC 29173 Query 65990 GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 66049 ||| | | ||| | | || ||| | ||||| | | ||||| ||||| Sbjct 29174 TTCTGAGTGAGTTTCGTCAAGACGTGGGGCTTCGTTAGGACAAAAGAGTGACCAATCTCC 29233 Query 66050 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCT 66109 || | | |||| || ||| || ||||| | ||||||||| ||| | |||||| Sbjct 29234 GTTTTGTTCTACTCTTTCCATGAAAAGATCGCTGACCCAAAGAGCGTAAAAGAGATCTCT 29293 Query 66110 GGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATA 66169 || ||| ||| || || || ||||||||| || || | || | | |||||| | Sbjct 29294 GGCTCTCATTTCTTCCTTACCATGATTCTTTTTGAGTTCAATAAATTCAAAAATATCTGA 29353 Query 66170 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 66229 ||||| ||||| | |||| || | | || | ||| || || ||||||| Sbjct 29354 GTGCCATGGTTCGAGATATACTGCAAAGGCACCTTTTCTTTTACCACCACCTTGATCTAC 29413 Query 66230 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATT 66289 || | ||| || | ||| |||| | | |||||| | | |||||| || ||||| Sbjct 29414 ATAACGAGCAGTATCATTGAAAACACGGAGCATTGGTACCAAACCATTACTGGTGCCATT 29473 Query 66290 GGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCC 66349 ||| || ||||| ||| | |||||||| ||| | | |||||| || || Sbjct 29474 GGTACCACGAATATAACTTTGAGCGGCACGAATCTTATGGCAAGCAATACCTATACCACC 29533 Query 66350 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 66409 ||| ||| || ||||| || ||| |||| | |||||||| || || || || ||| Sbjct 29534 TGCAGATTTTGAAATTAAAGCACATTGTTTGAGGGTATCATAAATACCATCGATTGAATC 29593 Query 66410 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 66469 || |||| | || || ||| || |||||||| | || || ||||| || Sbjct 29594 CTCTTTCATTTGAACTAAAAAGCATGAGGACATTTGTGGGTATGGTGTACCAGCATTGAA 29653 Query 66470 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 66529 | || || | || || ||||| ||||| | | | | ||| || ||| || Sbjct 29654 AAGAGTTGGTGTGGCATGTGTAAAGAGTTTTTGACTTAATTTCTCGTAGGTAAGAATTGC 29713 Query 66530 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 66589 ||| ||||| |||||| || | | |||||||||| |||||| || || | Sbjct 29714 ATTGTCGATATCGTTACCATGAATACCGATAGAAACACGCATTAGCATGTGTTGTGGACG 29773 Query 66590 TTCAACGATCTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAA 66648 ||||||||| | ||||| | | | ||| || || ||| || ||||| ||||||| Sbjct 29774 TTCAACGATGCTATTGTTGA-TACGATGAAGATATGAACGTTCTAATGTTTTGAAACCAA 29832 Query 66649 AATAGTTGTATGAAAAGTCTCGTTCGTAA 66677 | | | ||| || || |||| |||| Sbjct 29833 AGAAATCGTAATCGAAATCACGTTGGTAA 29861 >seq213 Length=53756 Score = 159 bits (176), Expect = 5e-34 Identities = 383/569 (67%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 35890 TTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGAT 35949 ||||||||| || ||||| | || | || || ||||||| |||| || ||||| Sbjct 48625 TTCGAAAAAGTTTGTTTTTCTTTGGAGGGAAATCATTTCCATCCAATCAAAAGGATTTGA 48566 Query 35950 AACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT---CTATCTGCGACAAATTC 36006 | |||||||||| |||||| | |||||| || | ||| | ||| || |||||| Sbjct 48565 AGCATTATAAATCTTTTTATAACCCAAT---GAGACCAAAAGACGATCAGCACAAAATTC 48509 Query 36007 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGG--AAGAGCCACA 36064 || ||| ||| || |||||| || || | | ||||| ||||| |||| Sbjct 48508 AATGTATTGAGACATTGAACGACTATTCATACCAATTAAATCTACTGGTAAAGAGTCACA 48449 Query 36065 GTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCA 36124 || |||||||| ||| | || || ||| | ||||| | | | || | | | Sbjct 48448 --AATAAATTCTTTTTCGCAAACAACGGCATCTCTAATAATGGCTTCAAGAGTCT-TGGA 48392 Query 36125 CTCG-GTGGATACAATAAAT--GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCC 36181 ||| || | | ||| | || || | | | |||||| |||| ||| || ||||| Sbjct 48391 TTCGAGTTTGTTTATTAATTTGGTGTATAAA--AGACATGCAAAATTGCAATGAAGACCT 48334 Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || || | | ||||||||||| ||||| || | || ||||||| || | ||| || Sbjct 48333 TCATCACGAGAGATTAATTCGTTTGAAAAGGTTAAACCTGGCATTAAACCTCTCTTCTTT 48274 Query 36242 AGCCAAAATATGG-ACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 | ||| || || || ||| | ||| || || || || |||||||| ||||| || Sbjct 48273 AACCAGAAAATACTACAAAAACTA-CCACTGAAAAAGATACCCTCTACTGCGGCAAATGC 48215 Query 36301 AATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTT 36360 || | | ||| || || |||| | || ||||| ||| |||||||| || || Sbjct 48214 AACCAAACGTTCTGCAAAAGAATCACTATTATTAATCCATTTTAATGCCCAATCAGCTTT 48155 Query 36361 CTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATC 36420 |||||| | ||| || || || ||||| || ||||| || | |||||| | | |||| Sbjct 48154 CTTTTTAATACATGGAATGGTATCTATTGCGTTAAATAGTTTACTTTTTTGCTCATTATC 48095 Query 36421 TTTAACATATGTATCAATCAAAAGACTAT 36449 ||||| |||||||||||| |||||||||| Sbjct 48094 TTTAATATATGTATCAATTAAAAGACTAT 48066 Score = 145 bits (160), Expect = 1e-29 Identities = 226/320 (71%), Gaps = 5/320 (2%) Strand=Plus/Minus Query 36453 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 36512 |||| || ||||| |||||||| || ||||| || || || ||||||||||| || | || Sbjct 47992 TTTCAGAGTGAATATTTTCAATTGCAATTTGGAAACCATAAAAACATCTAGCTTCTGGAA 47933 Query 36513 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 36572 | || || || | |||| || | |||||| || || || || ||| || | Sbjct 47932 TTTGGACCTCACTCATGAATCTAGTGGCAAGATTTTCGTTTACAATACCATCAGAAGCGG 47873 Query 36573 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTT-TGGTGTTAGTT---TATTC 36628 |||| || || || |||| ||||||| |||||| | || | |||| || || Sbjct 47872 CAAAGAATGCTAAAACATTGGAAATAAAATGACGTTCGTTATCGT-TGAGTTTACTACTC 47814 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 ||||| |||| |||| | | ||| | |||||| |||||||||| ||| ||||| Sbjct 47813 CAATCGTTGAGATCTGGTGCAAGATCAATTTCTTCTGCTGTCCAAAAACTTGCTTCTGCT 47754 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGA 36748 | |||||||||| ||||||| || | |||| |||||||| | |||||||||| || | Sbjct 47753 TGTTTATACATACTCCAGATATCTGGGTATTTTATTGGAAATAATACAAATCTATCTTTA 47694 Query 36749 TTTTTTGCAAGGATTGGTTC 36768 |||| | | |||||||| Sbjct 47693 TTTTCTTTTAAAATTGGTTC 47674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166226499160