Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq213 158 1e-33 >seq213 Length=53756 Score = 158 bits (174), Expect = 1e-33 Identities = 259/363 (71%), Gaps = 14/363 (4%) Strand=Plus/Minus Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 |||||||||| || ||||| || || || || ||||||||||||||||||||||||| Sbjct 47992 TTTCAGAGTGAATATTTTCAATTGCAATTTGGAAACCATAAAAACATCTAGCTTCTGGAA 47933 Query 14018 ATTGTACCTCCGAGTAA--AATCTTTCTGCCAAG-TTTTCATTAACAATACCATCACTAG 14074 ||| ||||| | | | |||| | || |||| ||||| || |||||||||||| || Sbjct 47932 TTTGGACCTC--ACTCATGAATC-TAGTGGCAAGATTTTCGTTTACAATACCATCAGAAG 47876 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT---TTT 14131 | ||||| ||||| || | || |||||| | | || | || |||||||| | Sbjct 47875 CGGCAAAGAATGCTAAAACATTGGAAATAAAATGACGTTCGTTATCGTTGAGTTTACTAC 47816 Query 14132 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 |||||||| | ||| | |||||| | ||| || ||||||||||||| || | | Sbjct 47815 TCCAATCGTTGAGATCTGGTGCAAGATCAATTTCTTCTGCTGTCCAAAAACTTGCTTCTG 47756 Query 14192 CTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT-TGAA 14250 ||| ||||||||| ||| || ||| ||| ||| ||||| | ||||||||| | Sbjct 47755 CTTGTTTATACATACTCCAGATATCTGGGTATTTTATTGGAAATAATACAAATCTATCTT 47696 Query 14251 GATGTTTCTTTAAGAATTGGCTC-CATTTTATTTTAT--ACTATAAAAATAATATTTCAT 14307 || ||||||| | |||||| || | | |||| || | ||| ||| || ||||| | Sbjct 47695 TAT-TTTCTTTTAAAATTGGTTCTTCTATAATTTGATTCATTATTAAACTATTATTTTTT 47637 Query 14308 TAT 14310 ||| Sbjct 47636 TAT 47634 Score = 147 bits (162), Expect = 2e-30 Identities = 350/521 (67%), Gaps = 21/521 (4%) Strand=Plus/Minus Query 13392 TTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGT 13451 ||| |||||||| ||||| | || || || || ||||||| |||| || ||||||| Sbjct 48625 TTCGAAAAAGTTTGTTTTTCTTTGGAGGGAAATCATTTCCATCCAATCAAAAGGATTTGA 48566 Query 13452 TGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAAT 13511 | || | | || | | |||| | | | || | | ||||||| ||| ||||| Sbjct 48565 AGCATTATAAATCTTTTTATAACCCAATGAGACCAAAAGACGATCAGCACAAAATTCAAT 48506 Query 13512 ATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAA 13571 |||||||||||| || || ||||||||| |||| | ||| || | | | | Sbjct 48505 GTATTGAGACATTGAACGACTATTCATACCAATTAAATCTACTGGTAAAGAGTCACAAAT 48446 Query 13572 AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT--CTT-AATAATGTC--ATTA 13626 |||||||||||| | || || || | ||||||| ||| || | | | ||| Sbjct 48445 AAATTCTTTTTCGCAAACAACGGCATC---TCTAATAATGGCTTCAAGAGTCTTGGATTC 48389 Query 13627 GAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684 || | |||| || | ||| ||||| ||| ||||||| |||||||| || | Sbjct 48388 GAGTTTGTTTATTAATTTGGTGTATAAAAG----ACATGCAAAATTGCAATGAAGACCTT 48333 Query 13685 CATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttA 13744 |||| | | || | |||||||||||| ||||| |||||||| || |||| || |||| Sbjct 48332 CATCACGAGAGATTAATTCGTTTGAAAAGGTTAAACCTGGCATTAAACCTCTCTTCTTTA 48273 Query 13745 ACC--AAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 ||| |||||| | || | | | |||| || || ||||| ||||| ||||| || Sbjct 48272 ACCAGAAAATACTACAAAAACTACCACTGAAA--AAGATACCCTCTACTGCGGCAAATGC 48215 Query 13803 TATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGA 13862 | | |||||| |||| || | | || || ||||||||| ||||| |||| Sbjct 48214 AACCAAACGTTCTGCAAAAGAATCACTATTATT---AATCCATTTTAATGCCCAATCAGC 48158 Query 13863 tttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 ||| ||||||||| | || || || ||||| || |||| Sbjct 48157 TTTCTTTTTAATACATGGAATGGTATCTATTGCGTTAAATA 48117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478584020094360