Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq213 159 4e-34 >seq213 Length=53756 Score = 159 bits (176), Expect = 4e-34 Identities = 233/323 (72%), Gaps = 11/323 (3%) Strand=Plus/Minus Query 21774 TTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAAC 21833 ||||||| || |||||||| || || || || || || ||||||||||| || |||| | Sbjct 47992 TTTCAGAGTGAATATTTTCAATTGCAATTTGGAAACCATAAAAACATCTAGCTTCTGGAA 47933 Query 21834 ATTGAACCTCGGAATAA--AATCGTTGAGCCAAG-TTTTCATTTACTATTCCATCACTGG 21890 ||| ||||| | | | |||| | | | |||| ||||| ||||| || |||||| | Sbjct 47932 TTTGGACCTC--ACTCATGAATC-TAGTGGCAAGATTTTCGTTTACAATACCATCAGAAG 47876 Query 21891 CGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTT--- 21947 ||||||| ||||| || | ||| ||||||| ||||||||||| ||| | ||| Sbjct 47875 CGGCAAAGAATGCTAAAACATTGGAAATAAAATGACGTTCGTTATC-GTTGAGTTTACTA 47817 Query 21948 -TCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATA 22006 ||||||| | |||| || | ||| | |||||| | ||||||||| || || Sbjct 47816 CTCCAATCGTTGAGATCTGGTGCAAGATCAATTTCTTCTGCTGTCCAAAAACTTGCTTCT 47757 Query 22007 GCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTTA 22066 || | |||||||||| |||||||||| ||| |||||||||||| |||||| || | Sbjct 47756 GCTTGTTTATACATACTCCAGATATCTGGGTATTTTATTGGAAATAATACAAATCTATCT 47697 Query 22067 TTTGATTCAACTAAAAGTGGTTC 22089 || ||| ||||| |||||| Sbjct 47696 TTATTTTCTTTTAAAATTGGTTC 47674 Score = 152 bits (168), Expect = 5e-32 Identities = 363/536 (68%), Gaps = 27/536 (5%) Strand=Plus/Minus Query 21208 TTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 ||||||||| ||||| |||| || | || || |||||| ||||||| |||||| Sbjct 48625 TTCGAAAAAGTTTGTTTTTCTTTGGAGGGAAATCATTTCCATCCAATCAAAAGGATTTGA 48566 Query 21268 AGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTAT 21327 || ||| | || || ||| |||||| | || | | ||| || |||||| || Sbjct 48565 AGCATTATAAATCTTTTTATAACCCAATGAGACCAAAAGACGATCAGCACAAAATTCAAT 48506 Query 21328 ATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAA 21387 |||||| ||||| | || ||||||||| || || | ||| || | || |||| Sbjct 48505 GTATTGAGACATTGAACGACTATTCATACCAATTAAATCTACTGGTAAAGA----GTCAC 48450 Query 21388 AAAAGA----TTTTTCTATAGAGACGGCTTCAACAATTATA--TTTATTA-TCCTAGATG 21440 ||| | |||||| | ||||| || ||| || || | | || | ||| Sbjct 48449 AAATAAATTCTTTTTCGCAAACAACGGCATCTCTAATAATGGCTTCAAGAGTCTTGGATT 48390 Query 21441 TACTAGGGGGATACAATAATT--GTTTAAACATCAAACATGCAAAATCACAATGCAAACC 21498 | || | | | ||||| || || | | | ||||||||||| ||||| | ||| Sbjct 48389 --CGAGTTTGTTT-ATTAATTTGGTGTATAAA--AGACATGCAAAATTGCAATGAAGACC 48335 Query 21499 TTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTT 21558 |||||| | | |||||||| || ||||| |||||||| |||||||| |||||||| || Sbjct 48334 TTCATCACGAGAGATTAATTCGTTTGAAAAGGTTAAACCTGGCATTAAACCTCTCTTCTT 48275 Query 21559 TAACC--AAAATATTGACGCAAA-TGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAA 21615 ||||| |||||| | || ||| | | |||||| || || ||||| || || ||||| Sbjct 48274 TAACCAGAAAATACT-ACAAAAACTACCACTGAAA--AAGATACCCTCTACTGCGGCAAA 48218 Query 21616 TGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTT 21675 |||||| || ||||| | | ||| || ||| ||||||||| |||||| | Sbjct 48217 TGCAACCAAACGTTCTGCAAA---AGAATCACTATTATTAATCCATTTTAATGCCCAATC 48161 Query 21676 TGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAttttttt 21731 || || | ||||||||| ||| ||||| || || || || || | | |||||| Sbjct 48160 AGCTTTCTTTTTAATACATGGAATGGTATCTATTGCGTTAAATAGTTTACTTTTTT 48105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531895487640760