Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq230 246 4e-60 seq213 163 4e-35 >seq230 Length=51241 Score = 246 bits (272), Expect = 4e-60 Identities = 1195/1889 (63%), Gaps = 64/1889 (3%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||||||| | | | | || || ||||| ||||||||||| || ||||| ||| Sbjct 27987 GTGAATTGAATAGCATCAGCAGCTGGACGAGTACGGAGATAGTACATACCAGTTTTGAGA 28046 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || |||| ||| |||||||| || ||||| | | || | || || || ||| Sbjct 28047 CCTTTTTTCCAAGAGTAGAAATGCATTGATGTAAGTTTAGCAAAAGTTGGTTCAGCAATA 28106 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 | ||| | | |||||||||||| || || || || | || |||||||| | || Sbjct 28107 AAAACATTGAAACTTTGACTTTGATCAATAAAAGCACCACGATCAGCAGCCATATCAATT 28166 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 | || ||||| ||||||||||| ||||| |||| | |||| ||| ||||||| | Sbjct 28167 AATGTTCTTTGTCTAATTTCCCAAACTGTTTTGTAAAGTTCTTTAAGATCATCTGGAATG 28226 Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA--TCTCATCAT 62144 || || | ||||| || |||| | | || |||||| | ||| | | Sbjct 28227 GATGGGATACTTTGAATTGAACCACGGTTGAGAACGATTTGATTCTTTAATTCTGGTGA- 28285 Query 62145 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62204 ||| | | | ||| | | | || || || || ||| || | |||||| | Sbjct 28286 -CCAAATTCCTAACTCCATGAGATCTTCGAGAAGTTGTTTATTGACAATAGTAAATTCAC 28344 Query 62205 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 62264 ||| || || | ||| ||||||| ||||||||||| ||||| | | || || || | Sbjct 28345 CAGCTAAAACACGACGACTGTAAATGTTACTGGTATATGGTTCAAAGCATTCGTTGTTAC 28404 Query 62265 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62324 | |||||||| | |||||||||||| ||||| ||||| | || | || | ||||| Sbjct 28405 CTAAAATTTGTGAAGTTGATGCAGTTGGCATTGGTGCTATTAAAAGTGAGTTACGAAGAC 28464 Query 62325 --CGTATGTT-CTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA 62381 | | | || ||||||||||| ||| ||| |||||| ||| | ||| || Sbjct 28465 CACCTTTATTAACAATTTTATCTTTGAGATCAGTCCAGTTCCAACGATTTGTTGGTGTAA 28524 Query 62382 CNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGT 62441 | ||| |||||||| | ||||| || ||| | |||| || | Sbjct 28525 CATTCCAGAAATCGTATTGGAGAATACCTTGGCTGGCTGGTGAACCTTTAAATGTTTCAT 28584 Query 62442 ATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA-TGCACCGTAATAAATGGTT 62500 |||| ||||| | || || || | || ||| ||| | ||||||| ||| Sbjct 28585 ATGGACCTTCAATAAGAGATAACTCGTGTGATG-CTGTAAGGGCAGCAAAATAAATAGTT 28643 Query 62501 TCGAAGATCTTCTTATTTAGATCTTGC-GCTTCCAGGCTATCAAATGG-ATAATTTAAG- 62557 || || | | |||| || |||| || | | ||||||||| ||| ||| Sbjct 28644 TCTGCAATTTCAATGTTTA-ATTTTGCGGCAGCGGTACCATCAAATGGCATA--CGAAGT 28700 Query 62558 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62617 |||| || | || || | ||||||| ||||||||| || || | |||||| |||| Sbjct 28701 TGAATGAAAACATCAGCAAGACCTTGAATACCAATACCAATTGGACGATGTCTTAAATTA 28760 Query 62618 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677 ||| ||| |||||| ||| ||||| || ||| ||| |||||||| || ||||| || Sbjct 28761 GAGGTTTTGGCTTCTTGAACTGGATAGTAGTTACGATCAATAATTTTGTTAAGATTCTTG 28820 Query 62678 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA------------------- 62718 || | ||| | || | ||||| || |||||| Sbjct 28821 GTAACAATTTTAGTGATTTCATAAAGTTTTTGATGATCAAATTCTTTTTCTTTTGGATTG 28880 Query 62719 --TCGCCCATCTAT--TACAAA--CATGTT--CAATGCAACAGATGCCAGATTACAAACG 62770 | || ||| | ||| || || || || |||| ||||| |||||||| || Sbjct 28881 GTTGAACCTTCTTTTCTACGAATGAATTTTGGTAAGGCAATGGATGCGAGATTACATACA 28940 Query 62771 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 62830 || | ||||| | | ||||| || || || || ||||||||||| | | || Sbjct 28941 GCAATCTCATCTGGGGATGTGTATTGAATAATTTCGGTACAAAGATTACTGCTGCTAATA 29000 Query 62831 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 62890 || || | ||| | |||||| || ||||| | ||| ||||| ||||| ||||| Sbjct 29001 GTACCAAGATTCTTTTGATTGGATTTAGAATTACAAGAATCTTTATAGAGAATAAATGGT 29060 Query 62891 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 62950 ||||||||||||| ||||| || || || || ||| | || |||| || |||| | Sbjct 29061 GTACCAGTTTCAACTTGAGACTCCATGATTGCAAACCAAAGTTCTTGAGCTTTAATTACA 29120 Query 62951 -GATTTGTA--------TCTCTTTTC-TCTTTCGTATAGTGTATACAATCGTTCGAACTC 63000 | | | | | | ||||| | ||| ||| || || || || || Sbjct 29121 CGTCTAGCAAGGCCTGGTGTATTTTCATATTTGAGATAAAGTTCACGAT-GT------TC 29173 Query 63001 GTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCC 63060 ||| | | ||| || | || ||| | ||||| | | ||||| ||||| Sbjct 29174 TTCTGAGTGAGTTTCGTCAAGACGTGGGGCTTCGTTAGGACAAAAGAGTGACCAATCTCC 29233 Query 63061 GTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 63120 || | | |||| || ||| || ||||| | ||||||||| ||| |||||||| Sbjct 29234 GTTTTGTTCTACTCTTTCCATGAAAAGATCGCTGACCCAAAGAGCGTAAAAGAGATCTCT 29293 Query 63121 GGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 63180 || ||| ||| || || || ||||||||| || || | || | | |||||| || Sbjct 29294 GGCTCTCATTTCTTCCTTACCATGATTCTTTTTGAGTTCAATAAATTCAAAAATATCTGA 29353 Query 63181 ATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 63240 ||||| ||||| | |||| || | | || | ||| || || ||||||| Sbjct 29354 GTGCCATGGTTCGAGATATACTGCAAAGGCACCTTTTCTTTTACCACCACCTTGATCTAC 29413 Query 63241 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATT 63300 || | ||| || | ||| |||| | | |||||| | | |||||| || ||||| Sbjct 29414 ATAACGAGCAGTATCATTGAAAACACGGAGCATTGGTACCAAACCATTACTGGTGCCATT 29473 Query 63301 GGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCC 63360 ||| || ||||| ||| | ||||||||| ||| | | |||||| || || Sbjct 29474 GGTACCACGAATATAACTTTGAGCGGCACGAATCTTATGGCAAGCAATACCTATACCACC 29533 Query 63361 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 63420 ||| ||| || ||||| || ||| |||| | |||||||| || || || || ||| Sbjct 29534 TGCAGATTTTGAAATTAAAGCACATTGTTTGAGGGTATCATAAATACCATCGATTGAATC 29593 Query 63421 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 63480 || |||| | || || ||| || |||||||| | || || ||||| || Sbjct 29594 CTCTTTCATTTGAACTAAAAAGCATGAGGACATTTGTGGGTATGGTGTACCAGCATTGAA 29653 Query 63481 TAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63540 | || || | || || ||||| ||||| | | | | ||| || ||| || Sbjct 29654 AAGAGTTGGTGTGGCATGTGTAAAGAGTTTTTGACTTAATTTCTCGTAGGTAAGAATTGC 29713 Query 63541 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63600 ||| ||||| |||||| || | | |||||||||| |||||| || || | Sbjct 29714 ATTGTCGATATCGTTACCATGAATACCGATAGAAACACGCATTAGCATGTGTTGTGGACG 29773 Query 63601 TTCAACGATCTTGTTGTTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAA 63659 ||||||||| | ||||| | | | ||| || || ||| || ||||| ||||||| Sbjct 29774 TTCAACGATGCTATTGTTGA-TACGATGAAGATATGAACGTTCTAATGTTTTGAAACCAA 29832 Query 63660 AATAGTTGTATGAAAAGTCTCGTTCGTAA 63688 | | | ||| || || |||| |||| Sbjct 29833 AGAAATCGTAATCGAAATCACGTTGGTAA 29861 >seq213 Length=53756 Score = 163 bits (180), Expect = 4e-35 Identities = 385/570 (68%), Gaps = 20/570 (4%) Strand=Plus/Minus Query 32393 TTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGT 32452 ||||||||| || ||||| | || | || || ||||||| |||| || ||||| | Sbjct 48625 TTCGAAAAAGTTTGTTTTTCTTTGGAGGGAAATCATTTCCATCCAATCAAAAGGATTTGA 48566 Query 32453 AACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT---CTATCTGCGACAAATTC 32509 | |||||||||| |||||| | |||||| || | ||| | ||| || |||||| Sbjct 48565 AGCATTATAAATCTTTTTATAACCCAAT---GAGACCAAAAGACGATCAGCACAAAATTC 48509 Query 32510 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGG--AAGAGCCACA 32567 || ||| ||| || |||||| || || | | ||||| ||||| |||| Sbjct 48508 AATGTATTGAGACATTGAACGACTATTCATACCAATTAAATCTACTGGTAAAGAGTCACA 48449 Query 32568 GTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTC- 32626 || |||||||| ||| | || || ||| | ||||| | ||| | |||| Sbjct 48448 --AATAAATTCTTTTTCGCAAACAACGGCATCTCTAATAATGG--CTTCAAGAGTCTTGG 48393 Query 32627 ACTCG-GTGGATACAATAAAT--GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACC 32683 | ||| || | | ||| | || || | | | |||||| |||| ||| || ||||| Sbjct 48392 ATTCGAGTTTGTTTATTAATTTGGTGTATAAA--AGACATGCAAAATTGCAATGAAGACC 48335 Query 32684 CTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTT 32743 || || | | ||||||||||| ||||| || | || ||||||| || | ||| || Sbjct 48334 TTCATCACGAGAGATTAATTCGTTTGAAAAGGTTAAACCTGGCATTAAACCTCTCTTCTT 48275 Query 32744 AAGCCAAAATATGG-ACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||| || || || ||| | ||| || || || || |||||||| ||||| | Sbjct 48274 TAACCAGAAAATACTACAAAAACTA-CCACTGAAAAAGATACCCTCTACTGCGGCAAATG 48216 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 32862 ||| | | ||| || || | || | || ||||| ||| |||||||| || | Sbjct 48215 CAACCAAACGTTCTGCAAAAGAATCACTATTATTAATCCATTTTAATGCCCAATCAGCTT 48156 Query 32863 TCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTAT 32922 ||||||| | ||| || || || ||||| || ||||| || | |||||| | | ||| Sbjct 48155 TCTTTTTAATACATGGAATGGTATCTATTGCGTTAAATAGTTTACTTTTTTGCTCATTAT 48096 Query 32923 CTTTAACATATGTATCAATCAAAAGACTAT 32952 |||||| |||||||||||| |||||||||| Sbjct 48095 CTTTAATATATGTATCAATTAAAAGACTAT 48066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633625671600400