Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq86 107 2e-18 seq246 105 6e-18 seq242 86.0 6e-12 seq20 82.4 7e-11 >seq86 Length=87693 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | || ||||| | || || |||||||||||||||||||| Sbjct 63522 CCACCTCTTAATCTAAGAACTAAATGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAA 63463 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| |||||| | || | || || || || || || Sbjct 63462 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGG 63403 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| || | | ||| | ||| || | || |||||| Sbjct 63402 ATACCTTCTTTGTCTTGGATTTTGGTTTTAACATTTTCAATGGTATCTGAACCTTCGACT 63343 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||||| || || || ||||| |||||||| ||||| Sbjct 63342 TCGAGGGTGATGGTTTTACCAGTAAGGGTTTTGACAAAAATTTGCAT 63296 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | || ||||| | || || ||||||||||| || || || Sbjct 63978 CCACCTCTTAATCTGAGAACTAAATGGAGAGTTGATTCTTTTTGAATGTTATAGTCAGAA 63919 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| || || | || | || || ||||| || || Sbjct 63918 AGAGTACGACCATCTTCTAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGG 63859 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| || || |||| | ||| | ||| || | | |||||| Sbjct 63858 ATACCTTCCTTGTCTTGAATCTTGGTTTTGACGTTTTCAATGGTATCTGAGCCTTCGACT 63799 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||||| || || || ||||| |||||||| ||||| Sbjct 63798 TCGAGGGTGATGGTTTTACCAGTAAGGGTTTTGACAAAAATTTGCAT 63752 >seq246 Length=49296 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || || || ||||| | ||||| ||||||||||||||||| ||| Sbjct 11041 CCACCACGAAGTCTTAAAACTAAATGGAGGGTAGATTCTTTTTGAATATTGTAGTCGGAA 11100 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| || || |||| | || || ||||| || || Sbjct 11101 AGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATAAGTCTTTGTTGATCTGGTGGG 11160 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || |||||| || | | ||| | || || | || ||||| Sbjct 11161 ATACCTTCTTTATCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAACCTTCGACC 11220 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | |||||||| || || |||||||||||||| |||||| Sbjct 11221 TCTAAGGTGATGGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCATG 11268 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| || || ||||| | || || ||||||||||||||||| ||| Sbjct 10585 CCACCTCTTAATCTTAATACTAAATGAAGAGTTGATTCTTTTTGAATATTGTAGTCGGAA 10644 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| || || | || | || || ||||| || || Sbjct 10645 AGAGTACGACCATCTTCTAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGG 10704 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || |||||| || | | ||||| ||| || | || |||||| Sbjct 10705 ATACCTTCTTTATCTTGGATTTTGGCTTTTACATTTTCGATGGTATCAGAACCTTCGACT 10764 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || | |||||||||||||| ||||| Sbjct 10765 TCTAAAGTAATGGTTTTACCAGTTAAGGTTTTTACAAAAATTTGCAT 10811 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || || || ||||| | || || |||||||||||||| || ||| Sbjct 10813 CCACCACGAAGTCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCGGAA 10872 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||||| || || | || | || || ||||| || || Sbjct 10873 AGAGTACGACCATCTTCTAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGG 10932 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| |||||| || | | ||||| ||| || | || |||||| Sbjct 10933 ATACCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCGATGGTATCAGAACCTTCGACT 10992 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || | |||||||||||||| ||||| Sbjct 10993 TCTAAGGTGATAGTCTTACCAGTTAAGGTTTTTACAAAAATTTGCAT 11039 >seq242 Length=49570 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | || ||||| | || || ||||||||||| |||||||| Sbjct 4063 CCACCTCTTAATCTAAGGACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAATCAGAA 4122 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| |||||||| || | || | || || ||||| || || Sbjct 4123 AGAGTACGACCATCTTCTAATTGTTTTCCTGCAAAAATGAGACGTTGTTGATCTGGTGGG 4182 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || |||||| || | | ||| | || || | | || ||| Sbjct 4183 ATACCTTCTTTATCTTGGATTTTAGTTTTAACATTTTCAATAGTATCTGAGCCTTCAACT 4242 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || |||||||| |||||||| ||||| Sbjct 4243 TCTAAGGTGATAGTTTTACCAGTAAGAGTTTTAACAAAAATTTGCAT 4289 >seq20 Length=149080 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||||||||||||||| | || ||| ||| |||| ||||| || Sbjct 74516 GTTGATTCTTTTTGAATATTGTAATCTTGTAAGGTACGACCATCTTCTAATTGTTTACCG 74575 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| || || || || || || || || || || ||||| |||||| |||| Sbjct 74576 GCGAAGATTAAACGTTGTTGGTCAGGTGGGATACCTTCTTTGTCTTGGATTTTAGCCTTG 74635 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCC 127086 | | ||||| ||| || | || || ||||||| || | ||||| || Sbjct 74636 ACGTTTTCGATGGTATCTGAACCTTCAACTTCGAGAGTGATGGTTTTACC 74685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475496050935760