Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq230 163 3e-35 seq213 95.1 1e-14 seq317 82.4 9e-11 >seq230 Length=51241 Score = 163 bits (180), Expect = 3e-35 Identities = 690/1077 (64%), Gaps = 52/1077 (5%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||| |||||||| || || ||||| || | ||||| | || | ||||||||| | Sbjct 28020 CGGAGATAGTACATACCAGTTTTGAGACCTTTTTTCCAAGAGTAGAAATGCATTGATGTA 28079 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | || | | ||||| | || || | || | |||||| |||||| || || Sbjct 28080 AGTTTAGCAAAAGTTGGTTCAGCAATAAAAACATTGAAACTTTGACTTTGATCAATAAAA 28139 Query 115678 CGTCCCCGATCCGCCGCCATATCAA-TCACATCCTTCATCTTGATTTCCCACACAGTTCT 115736 || ||||| || |||||||||| | | | ||| || | |||||||| || ||| | Sbjct 28140 GCACCACGATCAGCAGCCATATCAATTAATGTTCTTTGTC-TAATTTCCCAAACTGTTTT 28198 Query 115737 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTT 115796 ||| || | |||| ||||||||| || |||| |||| || || |||| || Sbjct 28199 GTAAAGTTCTTTAAGATCATCTGGAATGGATGGGATACTTTGAATTGAACCAC---GGTT 28255 Query 115797 G---ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCAC 115853 | || || ||| ||| | || |||||| | || | || | ||||||| || | Sbjct 28256 GAGAACGATTTGATTCTTTAATTCTGGTGACCAAATTCCTAACTCCATGAGATCTTCGAG 28315 Query 115854 GAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGT 115913 || || |||||||||| | ||| ||||| || | || | || ||||| | Sbjct 28316 AAGTTGTTTATTGACAATAGTAAATTCACCAGCTAAAACACGACGACTGTAAATGTTACT 28375 Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973 || ||||| |||||||| || |||||||| || ||||| | || || || || ||||| Sbjct 28376 GGTATATGGTTCAAAGCATTCGTTGTTACCTAAAATTTGTGAAGTTGATGCAGTTGGCAT 28435 Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCT----AATGCGTTCCTTGAGGG 116029 ||||| || | ||| ||| || ||| ||||| | ||| || ||||| Sbjct 28436 TGGTGCTATTAAAAGTGAGTTACGAAGA-CCACCTTTATTAACAATTTTATCTTTGAGAT 28494 Query 116030 CGTCCCAGT-----CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGAT 116084 | ||||| || | ||| || || | | | ||| | ||| | ||||| || Sbjct 28495 CAGTCCAGTTCCAACG-ATTTG---TTGGTGT-AACATTCCAGAAATCGTATTGGAGAAT 28549 Query 116085 ACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC 116144 ||||||| ||||| || || | |||||| |||||||| || |||| | || || Sbjct 28550 ACCTTGGCTGGCTGGTGAACCTTTAAATGTTTCATATGGACCTTCAATAAGAGATAACTC 28609 Query 116145 G-GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA---TTG 116200 | | | | || ||||| || ||| || || || ||| | || | ||| Sbjct 28610 GTGTGAT-GCTGTAAGGGCAGCAAAATAAATAGTTTCTGCAATTTCAATGTTTAATTTTG 28668 Query 116201 CCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTT 116260 | ||| || |||||| | | ||| ||| || ||||| || ||||||| Sbjct 28669 C---GGCAGCGGTACCATCAAATGGCATACGAAGTTGAATGAAAACATCAGCAAGACCTT 28725 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGAT 116320 | | ||| | |||||||| |||||||| | |||||| || || | || |||| Sbjct 28726 GAATACCAATACCAATTGGACGATGTCTTAAATTAGAGGTTTTGGCTTCTTGAACTGGAT 28785 Query 116321 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 116380 | | || | ||| |||| | || ||||| ||||| |||| || |||||||||| || Sbjct 28786 AGTAGTTACGATCAATAATTTTGTTAAGATTCTTGGTAACAATTTTAGTGATTTCATAAA 28845 Query 116381 GCTTTTCGTAATCAAA---------------ACTGCGAGTCTCTTCATT--GAC--AT-- 116419 | |||| | |||||| | || | |||| || || || Sbjct 28846 GTTTTTGATGATCAAATTCTTTTTCTTTTGGATTGGTTGAACCTTCTTTTCTACGAATGA 28905 Query 116420 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 116479 | || || | ||| || || || |||||||| |||| ||||||| ||||| | Sbjct 28906 ATTTTGGTAAGGCAATGGATGCGAGATTACATACAGCAATCTCATCTGGGGATGTGTATT 28965 Query 116480 CTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACT 116539 |||||||| ||||| | ||| || |||| || || | ||||||||||| || | Sbjct 28966 GAATAATTTCGGTACAAAGATTACTGCTGCTAATAGTACCAAGATTCTTTTGATTGGATT 29025 Query 116540 TTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACT 116596 | | ||||| | ||| || ||||| ||| |||| || || || || ||| |||| Sbjct 29026 TAGAATTACAAGAATCTTTATAGAGAATAAATGGTGTACCAGTTTCAACTTGAGACT 29082 >seq213 Length=53756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 186/270 (69%), Gaps = 5/270 (2%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || ||||| || ||||| ||||| | ||| || || ||| | ||||||||| | ||| Sbjct 48342 TGAAGACCTTCATCACGAGAGATTAATTCGTTTGAAAAGGTTAAACCTGGCATTAAACCT 48283 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 | |||||| ||||||||||| |||||| ||| ||| ||||| ||||| || Sbjct 48282 CTCTTCTTTAACCAGAAAATACTACAAAAACTACCACTGAAAAAGATACCCTCTACTGCG 48223 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || || |||| | ||| || ||||| || ||| | ||| || ||| || | ||| Sbjct 48222 GCAAATGCAACCAAACGTTCTGCAAA--AGAATCACTAT-TATTAATCCATTTTAATGCC 48166 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG-TTCCTTCTT 127770 || | || || || | |||||||| | ||| | || || | ||| || || ||| || Sbjct 48165 CAATCAGCTTTCTTTTTAATACATGGAATGGTATCTATTGCGTTAAATAGTTTACTTTTT 48106 Query 127771 TTCTGATGGATCTTTGATGTACTTATCTAT 127800 | || || |||||| || || |||| || Sbjct 48105 TGCTCAT-TATCTTTAATATATGTATCAAT 48077 >seq317 Length=37906 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/200 (70%), Gaps = 5/200 (3%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG--- 12848 || |||||||| ||| || | |||||| | || | ||||||||| ||||| || Sbjct 22884 AAACCATCCATTTCAACTAACAATTGATTAAGAGTATTTTCACGTTCGTCATTACCGCCT 22825 Query 12849 GGCATACCACCCGCACTGCGTTGCT-TACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907 | | ||||| || | ||||| |||| | ||| |||||||| ||||||||||| || Sbjct 22824 GAGAAGCCACCTTGACCTC-TTGCTCTACCAATGGCATCAATTTCATCAATGAAAACAAT 22766 Query 12908 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 ||| ||| ||| | | || | || || | ||||| ||||| | ||| ||||| Sbjct 22765 ACATGGTGCATTCTTTCTAGCTAAATCGAATAAATCTCTAACTCTTGATGGACCAACACC 22706 Query 12968 CACAAACATCTCCACAAAAT 12987 |||||||| || || |||| Sbjct 22705 AACAAACATTTCAACGAAAT 22686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613501072596840