Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq230 347 1e-90 seq213 201 1e-46 seq214 84.2 2e-11 >seq230 Length=51241 Score = 347 bits (384), Expect = 1e-90 Identities = 1182/1837 (64%), Gaps = 76/1837 (4%) Strand=Plus/Plus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 || || | ||| ||||||||||| || | |||| |||| ||||||||||| Sbjct 28017 GTACGGAGATAGTACATACCAGTTTTGAGACCTTTTTTCCAAGAGTAGAAATGCATTGAT 28076 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 || | ||||| | || | ||||| | |||| || ||| | | |||||| ||||||||| Sbjct 28077 GTAAGTTTAGCAAAAGTTGGTTCAGCAATAAAAACATTGAAACTTTGACTTTGATCAATA 28136 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACC--CTTTGTGGTATCTCCCATACTG 47190 || ||||| | |||||| |||||||| || ||| |||||| || ||||| |||| Sbjct 28137 AAAGCACCACGATCAGCAGCCATATC--AATTAATGTTCTTTGTCTAATTTCCCAAACTG 28194 Query 47191 TTTTATAAATTTGTTTAATGTCTTCTGGGA--GATTAG-TATTTTGAATAGATCCTCCgt 47247 |||| |||| || ||||| || ||||| | ||| | || ||||||| || || | || Sbjct 28195 TTTTGTAAAGTTCTTTAAGATCATCTGGAATGGATGGGATACTTTGAATTGAACCACGGT 28254 Query 47248 tttctataattttgttttttaattcatttgaccaaagttttcgttcagttaatgttttta 47307 | | |||| || |||||||| |||||||| | | || | | || | Sbjct 28255 TGAGAACGATTTGATTCTTTAATTCTGGTGACCAAATTCCTAACTCCATGAGATCTTCGA 28314 Query 47308 aAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTAC 47367 ||| || ||| ||||| |||||| |||| || || | ||| || || || |||| Sbjct 28315 GAAGTTGTTTATTGACAATAGTAAATTCACCAGCTAAAACACGACGACTGTAAATGTTAC 28374 Query 47368 TTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCA 47427 | ||||||||||| | |||| || || || |||||||| | ||||||||| || |||| Sbjct 28375 TGGTATATGGTTCAAAGCATTCGTTGTTACCTAAAATTTGTGAAGTTGATGCAGTTGGCA 28434 Query 47428 TGGATGCAACTAATAAGCTATTT-CTTACTCCATATTT--------TTGTATCTNNNNNN 47478 | | ||| | ||| ||| | || | | ||| ||| || ||||| Sbjct 28435 TTGGTGCTATTAA-AAGTGAGTTACGAAGACCACCTTTATTAACAATTTTATCTTTGAGA 28493 Query 47479 NNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAA 47538 |||| | |||| ||| || ||| ||||||||| ||||| ||||| |||| Sbjct 28494 TCAG-----TCCAGTTCCAACGATTTGTTGGTGTAACATTCCAGAAATCGTATTGGAGAA 28548 Query 47539 TTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTT 47598 | |||| || || ||||| ||| |||||| ||| ||||| | | | || || Sbjct 28549 TACCTTGGCTGGCTGGTGAACCTTTAAATGTTTCATATGGACCTTCAA--TAAGAGATAA 28606 Query 47599 CACAACT--TGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATT 47656 | | | |||| | ||| | |||| || ||||| |||| ||||||| ||| Sbjct 28607 CTCGTGTGATGCTGTAAGGGCAGCAAAATAAATAGTTTCTGCAATTTCAATGTTTA-ATT 28665 Query 47657 CCTTGCTTCTGATGAT---TCAAAAGG-ATANNNNNNNNNNNNNAATGTATCTGCCAATC 47712 |||| | | | ||||| || ||| || ||| || | | Sbjct 28666 --TTGCGGCAGCGGTACCATCAAATGGCATACGAAGTTGAATGAAAAC-ATCAGCAAGAC 28722 Query 47713 CTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATG 47772 |||||| ||||||||||||||| | ||| || |||||| | |||||| | | || Sbjct 28723 CTTGAATACCAATACCAATTGGACGATGTCTTAAATTAGAGGTTTTGGCTTCTTGAACTG 28782 Query 47773 GATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTC 47832 |||| | ||| ||| |||||||| || ||| ||||| Sbjct 28783 GATAGTAGTTACGATCAATAATTTTGTTAAGATTCTTGGTAACAATTTTAGTGATTTCAT 28842 Query 47833 TTAATTTATTAAAATCAAA--CTTGTTATTTATAACA-----AACCT------------A 47873 | ||| | | |||||| ||| || ||| | ||||| | Sbjct 28843 AAAGTTTTTGATGATCAAATTCTTTTTCTTTTGGATTGGTTGAACCTTCTTTTCTACGAA 28902 Query 47874 TTAAGT--------GCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTAT 47925 | || | || || ||||| |||||||||||||| | ||||| ||| || | Sbjct 28903 TGAATTTTGGTAAGGCAATGGATGCGAGATTACATACAGCAATCTCATCTGGGGATGTGT 28962 Query 47926 ATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT-- 47983 |||| || ||||| | ||| ||||||| | | |||||||| | ||| | ||||| Sbjct 28963 ATTGAATAATTTCGGTACAAAGATTACTGCTGCTAATAGTACCAAGATTCTTTTGATTGG 29022 Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 ||| | |||| | || || || || ||||| ||||| |||||||| | ||||| Sbjct 29023 ATTTAGAAT--TACAAGAATCTTTATAGAGAATAAATGGTGTACCAGTTTCAACTTGAGA 29080 Query 48044 TTCAATGATAGATTTCCAAACAGTCCT--AGCCTTTATAACAGCTCTAGCTT----TATT 48097 || ||||| | ||||| || || ||| || || ||| |||||| | | Sbjct 29081 CTCCATGATTGCAAACCAAA--GTTCTTGAGCTTTAATTACACGTCTAGCAAGGCCTGGT 29138 Query 48098 ATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTA-TCTAACC 48156 | || ||| ||||| ||| || ||| | | | | | | | || || | | Sbjct 29139 GT-ATTTTCATATTTGAGATA-AAGTTCACGATGTTCTTCTGAGTGAGTTTCGTCAAGAC 29196 Query 48157 CAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAA 48216 || ||| |||||||| | | ||||||||| | | | || |||||| ||| | Sbjct 29197 GTGGGGCTTCGTTAGGACAAAAGAGTGACCAATCTCCGTTTTGTTCTACTCTTTCCATGA 29256 Query 48217 ATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCAC 48276 | | ||| | ||||||||| ||| | ||| || | ||| | |||||| || ||| Sbjct 29257 AAAGATCGCTGACCCAAAGAGCGTAAAAGAGATCTCTGGCTCTCATTTCTTCCTTACCAT 29316 Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 |||| |||| ||||||| ||| || | ||||| | ||||||||||| | ||||| || Sbjct 29317 GATTCTTTTTGAGTTCAATAAATTCAAAAATATCTGAGTGCCATGGTTCGAGATATACTG 29376 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | ||||| || |||| ||| |||||||||| ||| | ||||||| || ||| Sbjct 29377 CAAAGGCACCTTTTCTTTTACCACCACCTTGATCTACATAACGAGCAGTATCATTGAAAA 29436 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 | | | |||||| || | |||||| | |||||||| || |||||||||| | Sbjct 29437 CACGGAGCATTGGTACCAAACCATTACTGGTGCCATTGGTACCACGAATATAACTTTGAG 29496 Query 48457 TAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCAC 48516 || | || ||| | |||||||||||||||||| ||| || |||| ||||| Sbjct 29497 CGGCACGAATCTTATGGCAAGCAATACCTATACCACCTGCAGATTTTGAAATTAAAGCAC 29556 Query 48517 ACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAAC 48576 | |||| |||||||||||||| || || || ||| ||| |||| | | || ||| | Sbjct 29557 ATTGTTTGAGGGTATCATAAATACCATCGATTGAATCCTCTTTCATTTGAACTAAAAAGC 29616 Query 48577 AACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAA 48636 | |||||||| || | || || | ||| || | ||||| | ||||| ||| Sbjct 29617 ATGAGGACATTTGTGGGTATGGTGTACCAGCATTGAAAAGAGTTGGTGTGGCATGTGTAA 29676 Query 48637 ACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTA 48696 | ||| | ||| | || || ||| || || ||||| ||| | Sbjct 29677 AGAGTTTTTGACTTAATTTCTCGTAGGTAAGAATTGCATTGTCGATATCGTTACCATGAA 29736 Query 48697 TACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTT 48756 |||| ||||| |||||||||| ||| | ||| || | |||||| || | || || || Sbjct 29737 TACCGATAGAAACACGCATTAGCATGTGTTGTGGACGTTCAACGATGCTATTGTTGATAC 29796 Query 48757 TCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAA 48793 ||||||||| ||| |||||||| |||||||| Sbjct 29797 GATGAAGATATGAACGTTCTAATGTTTTGAAACCAAA 29833 >seq213 Length=53756 Score = 201 bits (222), Expect = 1e-46 Identities = 243/328 (74%), Gaps = 7/328 (2%) Strand=Plus/Minus Query 19252 CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCT 19311 ||||| |||| || ||||||||||| || || || || || || ||||||||||| ||| Sbjct 47999 CTGTAAGTTTCAGAGTGAATATTTTCAATTGCAATTTGGAAACCATAAAAACATCTAGCT 47940 Query 19312 TCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCA 19371 |||| || || || ||||| ||||| | | | |||||| || || || |||||| Sbjct 47939 TCTGGAATTTGGACCTCACTCATGAATCTAGTGGCAAGATTTTCGTTTACAATACCATCA 47880 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTC---ATC--TGAGGTTA 19426 ||| ||||| |||||||| |||| ||||||||| ||| ||| |||| ||| Sbjct 47879 GAAGCGGCAAAGAATGCTAAAACATTGGAAATAAAATGACGTTCGTTATCGTTGAGTTTA 47820 Query 19427 ATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 | | ||||||| || | |||| | | ||| | |||||| ||||||||||| | Sbjct 47819 CT--ACTCCAATCGTTGAGATCTGGTGCAAGATCAATTTCTTCTGCTGTCCAAAAACTTG 47762 Query 19487 CCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATC 19546 | ||||||| ||||||||| |||| ||||| | |||| ||| ||||||| ||||||| Sbjct 47761 CTTCTGCTTGTTTATACATACTCCAGATATCTGGGTATTTTATTGGAAATAATACAAATC 47702 Query 19547 TATTTTTATTTTCTTTAAGAATAGGTTC 19574 ||| |||||||||||| | ||| ||||| Sbjct 47701 TATCTTTATTTTCTTTTAAAATTGGTTC 47674 Score = 187 bits (206), Expect = 3e-42 Identities = 405/598 (68%), Gaps = 20/598 (3%) Strand=Plus/Minus Query 18665 CCATTTTTTG-ATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGAT 18723 ||| |||| | ||||||||| ||| | ||| || || || ||||||| | | || Sbjct 48654 CCAGTTTTAGCATATTCGGCTACTTTACCTTCGAAAAAGTTTGTTTTTCTTTGGAGGGAA 48595 Query 18724 ATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCT 18783 || |||||| ||||||| |||||| ||||||| || ||||| | || ||| Sbjct 48594 ATCATTTCCATCCAATCAAAAGGATTTGAAGCATTATAAATCTTTTTATAACCCAATGAG 48535 Query 18784 AATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCT 18843 | | || | ||| || ||||| ||| ||| ||| | || |||||| || Sbjct 48534 ACCAAAAGACGATCAGCACAAAATTCAATGTATTGAGACATTGAACGACTATTCATACCA 48475 Query 18844 ATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT 18903 ||||| | || |||| | || || |||||||| ||| | || || ||| Sbjct 48474 ATTAAATCTACTGGTAAAGAGTCACAAATAAATTCTTTTTCGCAAACAACGGCATCTCTA 48415 Query 18904 ATAATAGATACAACTCTATCTTCATTAG-GAGGGTATAGAA----GATGTTTAAACATCA 18958 ||||| | | ||| | | | ||| | | || || | | ||| |||| | Sbjct 48414 ATAATGGCTTCAAGAGTCT-TGGATTCGAGTTTGTTTATTAATTTGGTGTATAAA----A 48360 Query 18959 AACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTA 19018 ||||||||||| ||||| || || || || | | || ||||| || ||||| |||| Sbjct 48359 GACATGCAAAATTGCAATGAAGACCTTCATCACGAGAGATTAATTCGTTTGAAAAGGTTA 48300 Query 19019 AACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGA 19078 |||| ||||| | ||||| || ||||||||||| ||| | ||| ||| || | Sbjct 48299 AACCTGGCATTAAACCTCTCTTCTTTAACCAGAAAATACTACAAAAACTACCACTGAAAA 48240 Query 19079 ATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTAT 19138 | ||||| |||||||| ||||| ||||| | | |||| || | || |||| |||||| Sbjct 48239 AGATACCCTCTACTGCGGCAAATGCAACCAAACGTTCTGCAAA---AGAATCACTATTAT 48183 Query 19139 GAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 ||||||||| | |||||||||||| |||||||| | |||||| || || ||||| | | Sbjct 48182 TAATCCATTTTAATGCCCAATCAGCTTTCTTTTTAATACATGGAATGGTATCTATTGCGT 48123 Query 19199 TAAATAG-ATAC--ATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253 ||||||| ||| | |||||| ||||||||| ||||| ||| || || | ||| Sbjct 48122 TAAATAGTTTACTTTTTTGCTCAT---TATCTTTAATATATGTATCAATTAAAAGACT 48068 >seq214 Length=53335 Score = 84.2 bits (92), Expect = 2e-11 Identities = 170/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 65886 AGATATTGTAGAGTTTTGTGAAAATATGGCAAATAAAGGAAAAATAGTGATAGTTGCAGC 65945 |||| | || | ||| ||||| | | ||||| |||| |||| || || ||||||| Sbjct 25339 AGATGTCGTTCAATTTAGTGAAGAATTAGCAAACCAAGGCAAAACTGTTATCATTGCAGC 25280 Query 65946 ATTGGATGGAACATTTAAAAGAAAACCTTTTGGTAATGTATTAAATTTAAT-TCCATTAT 66004 || ||||| || || ||||||||||||||| ||| | ||||| | |||| | Sbjct 25279 TTTAGATGGCACTTTCCAAAGAAAACCTTTTGCATCTGTCATTGATTTAGTCTCCA-AAG 25221 Query 66005 CTGAAACAGTAACAAAACTTACAGCTGTGTGTATGAAATGTTTTAAAGATGCATCTTTTT 66064 | ||| | || ||| | || ||||| |||||| |||| ||| ||||| |||| | Sbjct 25220 CCGAAGTTATCACCAAATTGACCGCTGTTTGTATGGTTTGTTATAACGATGCTGCTTTCT 25161 Query 66065 CAAAACGTATAGGTACAGAAACAGAGATAGAAATTATAGGCGGTAAAGATAAATATCTAT 66124 | |||||||| | || | || || | || || |||| ||||||||| ||| Sbjct 25160 CCAAACGTATTGTCGATGATGATAACATCGAGTTGATTGGAGGTATTGATAAATATATAT 25101 Query 66125 CTGTATGTAG 66134 | || ||||| Sbjct 25100 CAGTTTGTAG 25091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103185938360