Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq242 96.9 3e-15 seq246 95.1 9e-15 seq86 89.7 4e-13 >seq242 Length=49570 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || ||||||||||| ||||| ||||| ||| | ||| | || || Sbjct 3625 ACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTACGACCATCTTCT 3684 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| ||||| || |||| |||||||| | || | || || ||||| | Sbjct 3685 AATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGA 3744 Query 48678 ATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 || ||| ||||| || | | || ||||| | || || || | ||||| ||||| Sbjct 3745 AT-TTTAGTTTTAACGTTTTCAATAGTATCTGAGCCTTCAACTTCTAAAGTAATGGTTTT 3803 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||| || ||||| ||||| Sbjct 3804 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 3833 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || ||||||||||| ||||||||||| ||| | ||| | || || Sbjct 4081 ACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCT 4140 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || ||||| || || || |||||||| | || | || || || || Sbjct 4141 AATTGTTTTCCTGCAAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGG 4200 Query 48678 ATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 || ||| ||||| ||| | | || ||||| | || || || | || || ||||| Sbjct 4201 AT-TTTAGTTTTAACATTTTCAATAGTATCTGAGCCTTCAACTTCTAAGGTGATAGTTTT 4259 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||| |||||||| ||||| Sbjct 4260 ACCAGTAAGAGTTTTAACAAAAATTTGCAT 4289 >seq246 Length=49296 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||| || || ||||||||||||||||| || || ||| | ||| | || Sbjct 10600 AATACTAAATGAAGAGTTGATTCTTTTTGAATATTGTAGTCGGAAAGAGTACGACCATCT 10659 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || ||||||||||| || || || |||||||| | || | || || || || Sbjct 10660 TCTAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCTTTATCT 10719 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 || || ||||||| | | | || || | || || || | ||||| ||| Sbjct 10720 TGGATTTTGGCTTTTACATTTTCGATGGTATCAGAACCTTCGACTTCTAAAGTAATGGTT 10779 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||||||||| ||||| Sbjct 10780 TTACCAGTTAAGGTTTTTACAAAAATTTGCAT 10811 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||| || || ||||||||||||||||| || || ||| | ||| | || Sbjct 11056 AAAACTAAATGGAGGGTAGATTCTTTTTGAATATTGTAGTCGGAAAGAGTACGACCATCT 11115 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || ||||||||||| || |||| |||||||| | || | || || || || Sbjct 11116 TCTAATTGTTTACCGGCAAAGATAAGTCTTTGTTGATCTGGTGGGATACCTTCTTTATCT 11175 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 || || ||||||| | | || || || | || ||||| | || || ||| Sbjct 11176 TGGATTTTAGCTTTTACATTTTCAATAGTATCAGAACCTTCGACCTCTAAGGTGATGGTT 11235 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | |||||||||||||| ||||| Sbjct 11236 TTGCCAGTAAGGGTTTTTACAAAAATTTGCAT 11267 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||| || || |||||||||||||| || || || ||| | ||| | || Sbjct 10828 AAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAGTCGGAAAGAGTACGACCATCT 10887 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || || || ||||||||||| || || || |||||||| | || | || || ||||| Sbjct 10888 TCTAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCTTTGTCT 10947 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 || || ||||||| | | | || || | || || || | || || || Sbjct 10948 TGGATTTTAGCTTTTACATTTTCGATGGTATCAGAACCTTCGACTTCTAAGGTGATAGTC 11007 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||||||||| ||||| Sbjct 11008 TTACCAGTTAAGGTTTTTACAAAAATTTGCAT 11039 >seq86 Length=87693 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || ||||||||||| || || ||||| ||| | ||| | || || Sbjct 63960 ACTAAATGGAGAGTTGATTCTTTTTGAATGTTATAGTCAGAAAGAGTACGACCATCTTCT 63901 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||||||||| || || || |||||||| | || | || |||||||| | Sbjct 63900 AATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGA 63841 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| || | | | ||||| | || || || | || || ||||| Sbjct 63840 ATCTTGGTTTTGACGTTTTCAATGGTATCTGAGCCTTCGACTTCGAGGGTGATGGTTTTA 63781 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| |||||||| ||||| Sbjct 63780 CCAGTAAGGGTTTTGACAAAAATTTGCAT 63752 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || ||||||||||||||||||||||| ||| | ||| | || || Sbjct 63504 ACTAAATGGAGAGTTGATTCTTTTTGAATATTGTAATCAGAAAGAGTACGACCATCTTCT 63445 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || ||||| || || || || || ||||| || | || | || || ||||| Sbjct 63444 AATTGTTTACCAGCGAAAATAAGACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGG 63385 Query 48678 ATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 || ||| ||||| ||| | | | ||||| | || || || | || || ||||| Sbjct 63384 AT-TTTGGTTTTAACATTTTCAATGGTATCTGAACCTTCGACTTCGAGGGTGATGGTTTT 63326 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| |||||||| ||||| Sbjct 63325 ACCAGTAAGGGTTTTGACAAAAATTTGCAT 63296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933890501077