Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20purpureum_20[genbank_20GCA_5F000190715.1_202011-03- 02] 799 sequences; 32,967,225 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq246 89.7 9e-13 seq242 86.0 1e-11 >seq246 Length=49296 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| |||| || || ||||| || || || ||||| | || |||||||| Sbjct 11068 AGGGTAGATTCTTTTTGAATATTGTAGTCGGAAAGAGTACGACCATCTTCTAATTGTTTA 11127 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| |||||||||||| |||| | || |||| |||||||| || || ||| Sbjct 11128 CCGGCAAAGATAAGTCTTTGTTGATCTGGTGGGATACCTTCTTTATCTTGGATTTTAGCT 11187 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||||||||| |||| Sbjct 11188 TTTACATTTTCAATAGTAT 11206 >seq242 Length=49570 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || |||||||| ||||| ||||| | || |||||||| Sbjct 3862 AGAGTTGATTCTTTTTGGATATTATAGTCAGAGAGAGTACGACCATCTTCTAATTGTTTA 3921 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| |||| | ||||||| |||| | || |||| |||||||||||||| | Sbjct 3922 CCAGCAAAAATTAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTGGTC 3981 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||||||||| |||| Sbjct 3982 TTTACATTTTCAATTGTAT 4000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903402177180640